y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000265455 |
Family | PL4 |
Protein Properties | Length: 683 Molecular Weight: 78307.5 Isoelectric Point: 5.063 |
Chromosome | Chromosome/Scaffold: 002412304 Start: 12716 End: 14767 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 61 | 663 | 0 |
MLTQQTHNTVELNNGIVRVTFSYPGGDVIGIQYKGIDNLLEIKNPPSNRGYWDLVSKNGLDRLQGTTFKIVTSTADQIEISFNKTFDISLGDWTLPLNVD KRYIMQRGRAGFYAYAIYERLEGWPELHLGQTRLVLKLREDKFQFMAVSDDRRRFMPTAKDRDGDHAQALAYREAVLLTNPSNPDFKGEVDDKYQYSSAV KDIKVHGWISTDDAIGLWMITPSTEFRSAGPFKQELTSHVGPTSLTVFLSSHYVGRGFGLTFAEGEAWKKVFGPVFVYLNSDIPSSNASFSLWENAKEQM YEEVKSWPYNFTQSEDFPSSDERGSVAGQLLIWDSYFHEGLDSASYAYVGLAARGYAGSWQMECKGYQFWTQADKQGYFYIKDVRPGNYSLYATVPGFIG DYKYEHDITIEPASEINLANITFEPPRSGPTLWEIGIPDRSAAEFNIPDPYPTLVNRLFTDNYANKFRQYGLWERYGDYYPDHDLIYTVGTDNYNDDWFY AHVTRNRNGTYEATTWQIVFQLEDVWTGDYTLQLALASATYAELQVRFNNQXDTPHFSTGLIGKDNAIARHGIHGLYWLFSVDVPSYRLQQGYNTIYLTQ SRN |
Full Sequence |
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Protein Sequence Length: 683 Download |
MLSMEEVRQW RRWGILXVFS VALLXLLFFL HNNNGAXETI TISGRRALRS VNGNELNFNQ 60 MLTQQTHNTV ELNNGIVRVT FSYPGGDVIG IQYKGIDNLL EIKNPPSNRG YWDLVSKNGL 120 DRLQGTTFKI VTSTADQIEI SFNKTFDISL GDWTLPLNVD KRYIMQRGRA GFYAYAIYER 180 LEGWPELHLG QTRLVLKLRE DKFQFMAVSD DRRRFMPTAK DRDGDHAQAL AYREAVLLTN 240 PSNPDFKGEV DDKYQYSSAV KDIKVHGWIS TDDAIGLWMI TPSTEFRSAG PFKQELTSHV 300 GPTSLTVFLS SHYVGRGFGL TFAEGEAWKK VFGPVFVYLN SDIPSSNASF SLWENAKEQM 360 YEEVKSWPYN FTQSEDFPSS DERGSVAGQL LIWDSYFHEG LDSASYAYVG LAARGYAGSW 420 QMECKGYQFW TQADKQGYFY IKDVRPGNYS LYATVPGFIG DYKYEHDITI EPASEINLAN 480 ITFEPPRSGP TLWEIGIPDR SAAEFNIPDP YPTLVNRLFT DNYANKFRQY GLWERYGDYY 540 PDHDLIYTVG TDNYNDDWFY AHVTRNRNGT YEATTWQIVF QLEDVWTGDY TLQLALASAT 600 YAELQVRFNN QXDTPHFSTG LIGKDNAIAR HGIHGLYWLF SVDVPSYRLQ QGYNTIYLTQ 660 SRNWGPFAGV MYDYIRLEGP PPE 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.005 | 431 | 482 | 52 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 6.0e-27 | 382 | 481 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-47 | 493 | 678 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-63 | 72 | 342 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-75 | 67 | 250 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002308510.1 | 0 | 45 | 680 | 34 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 72 | 681 | 3 | 618 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 72 | 680 | 56 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 70 | 680 | 2 | 618 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 60 | 681 | 7 | 634 | lyase, putative [Ricinus communis] |