Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000266603 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44840.5 Isoelectric Point: 7.601 |
Chromosome | Chromosome/Scaffold: 000916157 Start: 31887 End: 33820 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 326 | 0 |
LWIIFQRDMTIKLNEELMMNSFKTIDGRGSSVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNAYVRDSPEHFGWRTLSDGDGVSIFGGSHVWVDHNSLS NCRDGLIDAIHGSTSITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGNFHVVNNDYTHWEMYAIGGSASPTINSQGNRFL A |
Full Sequence |
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Protein Sequence Length: 407 Download |
MAMPLSLLLL SLLLIPTTIS SSPVKDPELV MQEVQEYDIP DLSINASRRN LGYLSCGTGN 60 PIDDCWRCDP NWEKNRQRLA DCAIGFGKHA IGGRDGKIYV VTDSGDHPVN PKPGTLRYGV 120 IQNEPLWIIF QRDMTIKLNE ELMMNSFKTI DGRGSSVHIA GGPCITIQYV TNIIIHGLNI 180 HDCKQGGNAY VRDSPEHFGW RTLSDGDGVS IFGGSHVWVD HNSLSNCRDG LIDAIHGSTS 240 ITISNNYMTH HNKVMLLGHS DSYTQDKNMQ VTIAFNHFGE GLIQRMPRCR HGNFHVVNND 300 YTHWEMYAIG GSASPTINSQ GNRFLAPNDR FNKEVTKHED APQKEWSKWN WRSSGDLLLN 360 GAFFTASGAG ASTSYSKASS LSARPSSLVS SLTAGAGSLR CKKGSRC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 146 | 324 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-67 | 129 | 324 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-77 | 133 | 328 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 20 | 407 | 27 | 409 | pectate lyase [Salix gilgiana] |
RefSeq | XP_002285340.1 | 0 | 20 | 407 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311747.1 | 0 | 1 | 407 | 1 | 402 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 16 | 407 | 17 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 16 | 407 | 17 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 397 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 397 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-16 | 128 | 325 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000009 | 188 | 398 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000009 | 188 | 398 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |