| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000268496 |
| Family | GT76 |
| Protein Properties | Length: 692 Molecular Weight: 79505.8 Isoelectric Point: 8.4737 |
| Chromosome | Chromosome/Scaffold: 002258613 Start: 2088 End: 8461 |
| Description | Ribosomal protein S5 family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT76 | 9 | 130 | 1.3e-22 |
| VLTLILLWRTLLSSYDTSASINPDCLSTIPSQKNVLFHSLALAIESSIVWDSVNFVWIVEYGYEYEQTYAFFPLLPLCMSFLSRTVLTPLVPVIGQRAML GLSGYALITLASCLRQFIYRVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 692 Download |
| HSDEINNPVL TLILLWRTLL SSYDTSASIN PDCLSTIPSQ KNVLFHSLAL AIESSIVWDS 60 VNFVWIVEYG YEYEQTYAFF PLLPLCMSFL SRTVLTPLVP VIGQRAMLGL SGYALITLAS 120 CLRQFIYRVS AINSLIEEAI VQAERKGAKV ITYXCPTPRR FLQSAACAKR PSDQATATEK 180 HRGGGWRSGX VSIESNIFGR EFSHFEQAAA AMSKSQGFSX XRLIVKQGIK KPSKAPLPLA 240 RKISTRPHFP ATPQPPKWSF SSKIPYSTVS SRAAQDLLXE VEREKQRERE QRKRVGLDTK 300 DIDREDEEDY MGVMPLIEKL EXEKLKDTGD LNLYEEPTDS DSDEDDERFT PDAVKKRFDE 360 FQRKFTRHEE LLNNFTEAET LDDAYKWMNK IDKFEQKHFR LRPEYRVIGE LMNRLKVAEG 420 KDKFILQQKL NRAMRLVQWK EAYDPNNPAN YGVIQHEQVE PSVDLLEHAG FEKQKQIIQG 480 VDDDNEEEFN DMKEKDDXLL EKLNAIDKKL EEKLAELDHT FGKKGKVLEE EIRDLAEERN 540 DLTEKKRRPL YRKGFDVKLI NVNRTCKVTK GGQVVKYTAI LACGNYHGVX GYAKAKGPAV 600 PIALQKAYEK CFQNLHYIER HEEHTIAHAI QTSYKKTKVY LWPAPTRTGM KAGRTVETIL 660 NLAGFKNVKS KIETRKDVQD KFGRTVVEKY LL 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| CHL00138 | rps5 | 2.0e-15 | 558 | 672 | 115 | + ribosomal protein S5; Validated | ||
| pfam04188 | Mannosyl_trans2 | 3.0e-18 | 23 | 119 | 97 | + Mannosyltransferase (PIG-V)). This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI. | ||
| PRK00550 | rpsE | 4.0e-21 | 558 | 671 | 114 | + 30S ribosomal protein S5; Validated | ||
| TIGR01021 | rpsE_bact | 1.0e-22 | 558 | 672 | 115 | + ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. | ||
| COG0098 | RpsE | 1.0e-25 | 539 | 672 | 134 | + Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005789 | endoplasmic reticulum membrane |
| GO:0005840 | ribosome |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21991.1 | 0 | 311 | 692 | 1 | 404 | unnamed protein product [Vitis vinifera] |
| GenBank | EAY84083.1 | 0 | 310 | 692 | 96 | 501 | hypothetical protein OsI_05464 [Oryza sativa Indica Group] |
| RefSeq | XP_002276769.1 | 0 | 210 | 692 | 2 | 499 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319240.1 | 0 | 219 | 692 | 5 | 518 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524031.1 | 0 | 219 | 692 | 5 | 502 | 30S ribosomal protein S5, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gyb_E | 0.000000000000005 | 558 | 671 | 5 | 117 | A Chain A, Peanut Peroxidase |
| PDB | 2gy9_E | 0.000000000000005 | 558 | 671 | 5 | 117 | N Chain N, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 |
| PDB | 4gd2_E | 0.000000000000005 | 558 | 671 | 5 | 117 | N Chain N, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 |
| PDB | 4gd1_E | 0.000000000000005 | 558 | 671 | 5 | 117 | Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding |
| PDB | 4a2i_E | 0.000000000000005 | 558 | 671 | 5 | 117 | V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In Complex With The Yjeq Biogenesis Factor |
