Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000276859 |
Family | PL1 |
Protein Properties | Length: 481 Molecular Weight: 53065.6 Isoelectric Point: 5.9196 |
Chromosome | Chromosome/Scaffold: 003128397 Start: 16094 End: 19605 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 139 | 340 | 0 |
LWIVFPRNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNVHIHHCYQSGQANVRSSPTHYGFRTESDGDGISIFGSKDIWIDHCSLS HCKDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTISFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGDPTINSQGNRYT AP |
Full Sequence |
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Protein Sequence Length: 481 Download |
MIPRTCIVLL SLLTSFSPLA TAFLNLTLPG QHPNPDEVVL QVNRKVNASL ERRQMLQTTQ 60 KDNLDSTCLT GNPIDDCWKC DPDWPNNRQS LADCAIGFGQ YAHGGKGGEY YIVTDDSDDD 120 AVTPKPGTLR YAVIQTEPLW IVFPRNMLIK LSQELIFNSY KTLDGRGANV HIVGGGCITL 180 QYISNVIIHN VHIHHCYQSG QANVRSSPTH YGFRTESDGD GISIFGSKDI WIDHCSLSHC 240 KDGLIDAVMG STGITISNNY FSHHNEVMLL GHSDDYLPDS GMQVTISFNH FGEKLVQRMP 300 RCRRGYIHVV NNDFTQWEMY AIGGSGDPTI NSQGNRYTAP SNPNAKEVTK RVETAEGKWR 360 NWNWRSEGDI MVNGAFFVAS GEGVELNYEK AYSVEPKSAA LIDQLIMHAG ALGVGGRDNN 420 LGKWSSNGDG NGLGSGPDYT DDMSGSSRIP QPPLSSTSTI FSFFISLSCL LFLYIIPDMH 480 L |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-21 | 159 | 400 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-58 | 153 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-67 | 146 | 341 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 446 | 1 | 449 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 32 | 474 | 15 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 446 | 2 | 450 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 426 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 22 | 471 | 22 | 472 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 90 | 337 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000001 | 165 | 312 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000002 | 162 | 411 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |