| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000281231 |
| Family | GH5 |
| Protein Properties | Length: 2072 Molecular Weight: 233581 Isoelectric Point: 6.2211 |
| Chromosome | Chromosome/Scaffold: 006406203 Start: 9687 End: 24328 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH5 | 1047 | 1338 | 1.8e-30 |
| YYANGFNGYWLMYVASDXSQRHKVSSVFSEATSHGLTVARTWAFSDGGYXPLQLSPGSYNEQMFKGLDFVIAEARRYGIKLILSLVNNYESFGGRKQYVN WARSKGQYLASDDDFFRNPVVKGYYKNHVTTVLNRYNSYTGVHYKDDPTILAWELINEPRCTSDPSGRTIQAWIMEMASHVKSIDRNHLLEAGLEGFYGQ AIPHRMSLNPPFNIGTDFIANNRIPGIDFATVHSYPDQWLSSSNDQTQLTFLNNWLNTHIQDAQNILRKPIFIAEFGKSWKDPGLSTYQRDL | |||
| Full Sequence |
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| Protein Sequence Length: 2072 Download |
| MPTFTAIALD RLLEPGASSE SADMSSLPNS NSKPFSSSMP VPDSKLERRN STSAVEKRPN 60 RPPITPALYA TPEATPLPDS PTSFTPSPYI INHKRRGPRL MKSYSEQDVS LHQKAGDMEK 120 LNGDVNDAEA KGVKLNGDVN NAEAKVANLP VDDXDTFTFP KPVEVHHSNG IHHFESSNGK 180 LGTSNGQLRG INVELGTSSE REDSFYVPNK RSSNVELSNA SAREDDLLKQ PAMSPGRDSE 240 CEDFFDPKDS MSVASYNTDG EGSVWAERSP QTSTPTGEFY DAWDELSSES GHGQQLSVSD 300 LDVELREMRL SLIMEMEKRK QAEESMNNMQ RQWQRIREQL SLVGLTLPED PAAASGPEQL 360 GSDPAEDLCQ QVYLARFVSN SIGRGLIRAE MELEMEAQIE SKNFEIARLM DKLRNYEAMN 420 QEMVQRNQDV LEMARRDRER RERRQRWVWG SIATAXTLGT AALAYSYIPS SRGSPTFESE 480 AYSGPIPDNH TEFRRSSGTK VDPLDPPYIE VQLGQVQKQX ANNKRRRLSG LSAGKIKQRE 540 RVSSGTLDLR QWSYLCTCQQ FFPEKTPPPI TAIPPSSQPK TTTLLSSPIS PNXHNSRQKI 600 EEIGPPKLVL AATNQRLRIT EQEQSXEEEE EEEEEEDAGE EXEEEEEYDY SEDESSLLSL 660 SEKPDRNMAL LDENEMEEHE YAADPNHRSG YVAVLGKPNV GKSTLSNQMV GQKLSIVTDK 720 PHTTRHRILG VCSGTDYQMI LYDTXGVMEK RMHKLDSMMM KNVRSATVNA DCVVVLVDAC 780 KVPEKIDEVL EEGVGNQTES LPPILLVMNK KDLIKPGEIA KKLEWYEKFT NVDEVIPVSA 840 KLGQGVEDVK HWILSKLPFG PAYYPKDIVS EHPERFFVSE IVREKIFMQY RKEIPYSCQV 900 NVVSYKTRPM AKDFIQVEIV VEKNSQKIIV IGKEGRALKL LATAARLDIE NFLQKKVFLE 960 VVVKVKENWR QDEVLLKNYG YGVESXFSPD XLCEDSENPG IREXYXFIVX XAVIAWHLII 1020 HDMVSRALSN KCGHNIFCTV GARHSPYYAN GFNGYWLMYV ASDXSQRHKV SSVFSEATSH 1080 GLTVARTWAF SDGGYXPLQL SPGSYNEQMF KGLDFVIAEA RRYGIKLILS LVNNYESFGG 1140 RKQYVNWARS KGQYLASDDD FFRNPVVKGY YKNHVTTVLN RYNSYTGVHY KDDPTILAWE 1200 LINEPRCTSD PSGRTIQAWI MEMASHVKSI DRNHLLEAGL EGFYGQAIPH RMSLNPPFNI 1260 GTDFIANNRI PGIDFATVHS YPDQWLSSSN DQTQLTFLNN WLNTHIQDAQ NILRKPIFIA 1320 EFGKSWKDPG LSTYQRDLLF NTVYSKIYFS AKRGGAAAGG LFWQLLTEGM DSFRDGYDIV 1380 LSQNPSTENV IAQQSHKLNQ IRKIFARRRN AWMWRRARAI RRAEWLASAF AHTECRNPLL 1440 PEKKPDHLEQ KAQLGNDVDM IELNAQLKQL VKAGKVGDAR NMFDKMPQRD EISWTSMISG 1500 YVGVSDASEA LVLFSHMWVQ PGICMDPFVL SVVLKACGLG LNLSYGEVIH GYSIKSCFVN 1560 SVFVGSALLD MYMKIGKIEQ GCRVFDEMPI RNVVSWTTVI TGLVRAGYNA EGLEYFSEMW 1620 RSKVQYDAYV FAISLKACAD LRALKYGRAI HTQTMKKGFD ESSFVTNSLA TMYNKCGKLD 1680 YGLQLFEKMR IQDVVSWTSI ITTYLWTGQE DRAIKXFIRM QEAGVISGVA SLARVEWGEQ 1740 LHAHVLHRGF ISSLSVGNSV VTMYAKCGRL ASGSKVFHEM SRKDIVSWSA VIVGYSQGGY 1800 GEEAFQYLSW MRRDGPKPNE FALASVLSVC GSMAMLEQGK QLHAHVVSVG LEFSSMAEHG 1860 YYREAIDLFE KIPRVGXKPD SVTFIGVLVA CCHAGLVDLG FRYFNSMKND FGXNPAKEHY 1920 GCMIDLLCRA GRLSEAEHMI KCMPFQQDDV VWSILLRACR LHGDVDCGRR AADEILKLDP 1980 NCAVTHITLA NMYAARGKWR EAAEVRKMMR SKGVIKEPGW SWIKVRDRLS AFVAGDRSHP 2040 QVDDIYSVLE LLASKAEDTF QEIGSSLMDT ED |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03077 | PLN03077 | 4.0e-18 | 1708 | 2022 | 336 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 2.0e-60 | 1546 | 2012 | 531 | + Protein ECB2; Provisional | ||
| COG1159 | Era | 1.0e-79 | 685 | 984 | 301 | + GTPase [General function prediction only] | ||
| PRK00089 | era | 5.0e-100 | 685 | 981 | 298 | + GTPase Era; Reviewed | ||
| PLN03077 | PLN03077 | 1.0e-134 | 1464 | 2072 | 660 | + Protein ECB2; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003723 | RNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32548.1 | 0 | 1045 | 1427 | 42 | 424 | endo-1,4-beta-mannosidase protein 2 [Prunus persica] |
| EMBL | CAN70631.1 | 0 | 1418 | 2064 | 7 | 705 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266026.1 | 0 | 1418 | 2064 | 7 | 705 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310258.1 | 0 | 1460 | 2063 | 1 | 654 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 1048 | 1401 | 22 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 1051 | 1388 | 31 | 374 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 1051 | 1388 | 31 | 374 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 1051 | 1388 | 31 | 374 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 1051 | 1388 | 31 | 374 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DY296355 | 329 | 1077 | 1405 | 0 |
| CK938256 | 300 | 1099 | 1398 | 0 |
| HO798074 | 368 | 1038 | 1405 | 0 |
| FC883962 | 286 | 1077 | 1362 | 0 |
| HO780470 | 349 | 1057 | 1405 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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