y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000284808 |
Family | GH28 |
Protein Properties | Length: 346 Molecular Weight: 37664.8 Isoelectric Point: 6.6033 |
Chromosome | Chromosome/Scaffold: 010755225 Start: 1808 End: 3391 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 339 | 2.99878e-43 |
VNLNLWDPANNRWKLRLKEQCSLQIRSVTGGAHPNAWITFQNIKNLSIYGEGTFDGKGVDKDCPSTTTGNKCTSKPMVRTYNXLFFRVTNAEIGDITSTN CDYVHIGIFESTNVLIEDVNIYEMGSDGILNIIIYNSNCITISNDNSDIHVEKMPCEAGNGLGIGPLGXDQFEKSVKCVTVKNCTFGHTEGGIRIESYHG SQKPLEISNLIFDDIIXDYTQNTPIILTQELCIPPKGKGRCEKTVPSNFKISNVSFKNVKGTTVHATVVKLSCGEGACNDVKFSDMSVNVI |
Full Sequence |
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Protein Sequence Length: 346 Download |
MGSKFSHGIT CFLFLVTIFA IKAKTDXIDL DIKKFGAKGD GKTGDTASVN LNLWDPANNR 60 WKLRLKEQCS LQIRSVTGGA HPNAWITFQN IKNLSIYGEG TFDGKGVDKD CPSTTTGNKC 120 TSKPMVRTYN XLFFRVTNAE IGDITSTNCD YVHIGIFEST NVLIEDVNIY EMGSDGILNI 180 IIYNSNCITI SNDNSDIHVE KMPCEAGNGL GIGPLGXDQF EKSVKCVTVK NCTFGHTEGG 240 IRIESYHGSQ KPLEISNLIF DDIIXDYTQN TPIILTQELC IPPKGKGRCE KTVPSNFKIS 300 NVSFKNVKGT TVHATVVKLS CGEGACNDVK FSDMSVNVIG GDSPAA 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-20 | 30 | 323 | 346 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-23 | 30 | 323 | 339 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 1.0e-23 | 31 | 346 | 363 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-32 | 82 | 345 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-33 | 31 | 342 | 356 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 3e-36 | 23 | 345 | 64 | 417 | polygalacturonase; pectinase [Arabidopsis thaliana] |
GenBank | AAX45476.1 | 2e-35 | 30 | 344 | 31 | 378 | polygalacturonase [Lilium longiflorum] |
EMBL | CAA11160.1 | 3e-36 | 23 | 345 | 64 | 417 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 2e-36 | 23 | 345 | 64 | 417 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 3e-36 | 23 | 345 | 64 | 417 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 0.0000002 | 165 | 346 | 177 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000002 | 165 | 346 | 177 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.0000004 | 182 | 337 | 176 | 322 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.0000004 | 182 | 337 | 176 | 322 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ia5_A | 0.0000004 | 182 | 337 | 176 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Signal Peptide | |||||
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Cleavage Site | |||||
25 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW869811 | 224 | 49 | 258 | 0 |
GW869811 | 46 | 1 | 46 | 0 |
BQ641047 | 163 | 182 | 342 | 3.9937e-43 |
GR462194 | 283 | 83 | 345 | 7e-32 |
GR451013 | 284 | 84 | 346 | 2e-31 |
Orthologous Group | |||||
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Species | ID | ||||
Citrus sinensis | orange1.1g047946m | ||||
Glycine max | Glyma14g23621.1 | ||||
Populus trichocarpa | Potri.012G013600.1 | ||||
Prunus persica | ppa012438m | ppa026186m | |||
Vitis vinifera | GSVIVT01020328001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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