y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000286230 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42832.4 Isoelectric Point: 7.9501 |
Chromosome | Chromosome/Scaffold: 010151114 Start: 2848 End: 5008 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 387 | 0 |
TDACASTSASKIVVPSGTYKFVGATFKGPCKGPIEFQLQGTLQAPEHIKELPKEDTWVAFERIDGLTLSGGGTFDGQGATAWKQNDCHKNKDCKFKAVNL RFNFITNSIVRGITTKDSKNFHVNLLGCNKLAFQDFTVSAPKESVNTDGIHMGRSTEINITDTTIGTGDDCISIGHGTKQLHVTNVTCGPGHGISIGSLG RTEDEEPVSGIFIKNCTITNTDNGVRIKTWPASPAKGTAVSDVHFXDIIMDNVKNPVVIDQEYCPHKLCTPEVSSKVKISNVSFKNIKGSSSGPVGVKLL CSGKLPCENVELSNIDLTYTGDKGSITSECKHVKPT |
Full Sequence |
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Protein Sequence Length: 401 Download |
MDLKLKNILS MFVFLLLVSS SNAQSGVYDV TGANYGGKAN SDITQALSKA WTDACASTSA 60 SKIVVPSGTY KFVGATFKGP CKGPIEFQLQ GTLQAPEHIK ELPKEDTWVA FERIDGLTLS 120 GGGTFDGQGA TAWKQNDCHK NKDCKFKAVN LRFNFITNSI VRGITTKDSK NFHVNLLGCN 180 KLAFQDFTVS APKESVNTDG IHMGRSTEIN ITDTTIGTGD DCISIGHGTK QLHVTNVTCG 240 PGHGISIGSL GRTEDEEPVS GIFIKNCTIT NTDNGVRIKT WPASPAKGTA VSDVHFXDII 300 MDNVKNPVVI DQEYCPHKLC TPEVSSKVKI SNVSFKNIKG SSSGPVGVKL LCSGKLPCEN 360 VELSNIDLTY TGDKGSITSE CKHVKPTINN VAKPLACATS S 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-64 | 34 | 401 | 377 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-65 | 30 | 381 | 368 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-69 | 23 | 397 | 379 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-101 | 55 | 385 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-108 | 34 | 398 | 367 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP37458.1 | 0 | 8 | 401 | 7 | 405 | polygalacturonase [Fragaria x ananassa] |
GenBank | ABE77145.1 | 0 | 8 | 401 | 7 | 405 | putative polygalacturonase [Fragaria x ananassa] |
GenBank | ABR26683.1 | 0 | 8 | 401 | 7 | 405 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89477.1 | 0 | 1 | 397 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 397 | 1 | 393 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-18 | 117 | 384 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 117 | 384 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 117 | 384 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 117 | 384 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-18 | 117 | 384 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |