| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000288520 |
| Family | AA1 |
| Protein Properties | Length: 762 Molecular Weight: 85584.9 Isoelectric Point: 9.049 |
| Chromosome | Chromosome/Scaffold: 011067435 Start: 3138 End: 10427 |
| Description | SKU5 similar 17 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 455 | 742 | 0 |
| LRISNVGNAMSFNFRIRNHQMVLVETEGSCTDQFALDSLDVHVGQSCLVLVTANQNAADYYMVASKLVNTSEFTNLVGNGVLHYSNSVSQVSGPLPEGPD PFDLDFSVDQAKSIRWNLTAGAARPNPQGTFNVSNVTLSQTLILQGSVANINGEPRYVVNNVSYRTPETPLKLADYYVNGTGVYQLDAFRVHYXNDDAAY GVSVVTGIHKGWIEIVFMNNLDAIDSWNLDGFGFYVVGFGNGDWSTDSRNTYNLYDPDVRSTVQVYPGXWTAVYAFLDNPGMWNLRSR | |||
| Full Sequence |
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| Protein Sequence Length: 762 Download |
| MKGSSPVGGN NNNDYSFKIL LTGDSGVGKS SLLLSFISNF VQDLPPTIGV DFKIKQILVG 60 GKRLKLTIWD TAGQERFGTV ISSYYRGAHG IILVYDVTRR ETFTNLSNIW AKEVETYSTN 120 PECIKILVGN KVDRENERAV TREEGLALAQ EHKCLFLECS AKTRENVQQC FKDLTMKVVA 180 INGLFPGPLI NATTNDFVHV NIFNDMDEPL LFTWNGIQQR LNSWQDGVSG TNCPIQPGTN 240 WTCVFQTKDQ IGSFFYFPSI NFHKAAGGFG PIHVINRNVI AIPFPRPEAA FDLLIGDWFY 300 DSYQKRHRLY KPAIMGRMHS RGKGISASAL PYKRTPPSWL KISTQDVEEN ICKFAKKGLT 360 PSQIGVILRD SHGIAQVKSV TGSKILRILK AHGLAPEIPE DLYHLIKKAV SIRKHLERNR 420 KDKDSKFRLI LVESRIHRLA RYYKKTKKLP PVWKLRISNV GNAMSFNFRI RNHQMVLVET 480 EGSCTDQFAL DSLDVHVGQS CLVLVTANQN AADYYMVASK LVNTSEFTNL VGNGVLHYSN 540 SVSQVSGPLP EGPDPFDLDF SVDQAKSIRW NLTAGAARPN PQGTFNVSNV TLSQTLILQG 600 SVANINGEPR YVVNNVSYRT PETPLKLADY YVNGTGVYQL DAFRVHYXND DAAYGVSVVT 660 GIHKGWIEIV FMNNLDAIDS WNLDGFGFYV VGFGNGDWST DSRNTYNLYD PDVRSTVQVY 720 PGXWTAVYAF LDNPGMWNLR SRPLKHWYLG QELYVRVYDA DP 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02835 | PLN02835 | 5.0e-50 | 173 | 304 | 132 | + oxidoreductase | ||
| cd01863 | Rab18 | 8.0e-89 | 17 | 178 | 163 | + Rab GTPase family 18 (Rab18). Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. | ||
| PLN02835 | PLN02835 | 3.0e-89 | 453 | 759 | 307 | + oxidoreductase | ||
| PTZ00072 | PTZ00072 | 2.0e-97 | 318 | 454 | 137 | + 40S ribosomal protein S13; Provisional | ||
| PLN03118 | PLN03118 | 3.0e-98 | 3 | 185 | 183 | + Rab family protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003735 | structural constituent of ribosome |
| GO:0005507 | copper ion binding |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0005634 | nucleus |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI31393.1 | 0 | 184 | 309 | 1 | 126 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI31393.1 | 0 | 453 | 762 | 169 | 479 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002271754.1 | 0 | 174 | 311 | 46 | 183 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002271754.1 | 0 | 453 | 762 | 224 | 534 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311058.1 | 0 | 437 | 762 | 204 | 531 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3iz6_O | 0 | 315 | 454 | 1 | 140 | I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome |
| PDB | 3j3a_N | 0 | 315 | 458 | 1 | 144 | FF Chain f, Structure Of The Human 40s Ribosomal Proteins |
| PDB | 3j38_N | 0 | 315 | 458 | 1 | 144 | HH Chain h, Structure Of The D. Melanogaster 40s Ribosomal Proteins |
| PDB | 3u5g_N | 0 | 315 | 454 | 1 | 140 | HH Chain h, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B |
| PDB | 3u5c_N | 0 | 315 | 454 | 1 | 140 | I Chain I, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CB823507 | 197 | 1 | 197 | 0 |
| CV082359 | 153 | 302 | 454 | 0 |
| CN901045 | 168 | 302 | 469 | 0 |
| GO538772 | 153 | 302 | 454 | 0 |
| CO415616 | 153 | 302 | 454 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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