Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000289069 |
Family | PL1 |
Protein Properties | Length: 386 Molecular Weight: 42211.3 Isoelectric Point: 8.5824 |
Chromosome | Chromosome/Scaffold: 010173125 Start: 24154 End: 25708 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 108 | 306 | 0 |
LWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGLSIHDCKPGKGGNVRSTPTHVGQRLGSDGDAISVFASSHVWIDHCFLA RSTDGLLDVTHASTAVTITNNYFSQHDKVMLLGHNDNFREDKNMRVTIAFNRFGAGLIERMPRVRFGYVANNIYEEWKMYAVGGSANPTIFSEGNYFIA |
Full Sequence |
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Protein Sequence Length: 386 Download |
MASLARLILL LLCFLTCIAP TFQAYSPDYY TTAKIIPKNI MNVVDSCWCT KSDWATNRRA 60 LANCAVGFGK DALGGKYGAT YVVTTSDDDP VNPAPGSLRY GVIQTQPLWI VFAKDMVITL 120 KNELIMNSFK TIDGRGAKVE IAYGPCITVQ GVSHVIIHGL SIHDCKPGKG GNVRSTPTHV 180 GQRLGSDGDA ISVFASSHVW IDHCFLARST DGLLDVTHAS TAVTITNNYF SQHDKVMLLG 240 HNDNFREDKN MRVTIAFNRF GAGLIERMPR VRFGYVANNI YEEWKMYAVG GSANPTIFSE 300 GNYFIAPETP FAKQVTKREA GGSWNNWKWR SSGDVFKNGA FFVQSGYGSC YPLYFPTQSF 360 KVSPGAMVPA LTSNAGPLDC IVGKAC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 75 | 321 | 263 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-60 | 121 | 304 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-75 | 115 | 307 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 7 | 386 | 6 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 386 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 386 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 386 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 21 | 386 | 20 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 42 | 376 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 42 | 376 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-16 | 110 | 306 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 186 | 304 | 187 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000000001 | 198 | 376 | 154 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |