Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000292963 |
Family | GH28 |
Protein Properties | Length: 236 Molecular Weight: 25575 Isoelectric Point: 5.2661 |
Chromosome | Chromosome/Scaffold: 013370143 Start: 14688 End: 15853 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 23 | 222 | 4.62428e-44 |
LHYSFFSNVVVRYVTILAPSDSPNTDGVDPDSSSNVCIEDSYISTGEDLVAVKSGWDEYGIAYGRPSFDITIRRIRGSSQFAGIAVGSETSGGVENVLAE HINRYNMGVGINIKTNIGRGGFIRSITVSDMYMEKVRKGVKIAGDVGDHPDEKCNQNAFPIVTGITLKDIWSVQVQQAGLLLGLNFTGICLCKINLHGVT |
Full Sequence |
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Protein Sequence Length: 236 Download |
MEMEFVGVDS ASSSRFIDTL YLLHYSFFSN VVVRYVTILA PSDSPNTDGV DPDSSSNVCI 60 EDSYISTGED LVAVKSGWDE YGIAYGRPSF DITIRRIRGS SQFAGIAVGS ETSGGVENVL 120 AEHINRYNMG VGINIKTNIG RGGFIRSITV SDMYMEKVRK GVKIAGDVGD HPDEKCNQNA 180 FPIVTGITLK DIWSVQVQQA GLLLGLNFTG ICLCKINLHG VTGSRNALWL AGLHIL 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-11 | 23 | 158 | 142 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-11 | 31 | 164 | 138 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-12 | 23 | 175 | 162 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-18 | 29 | 192 | 169 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-26 | 20 | 158 | 139 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 20 | 220 | 200 | 403 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 20 | 229 | 202 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 20 | 220 | 200 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 20 | 229 | 167 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 20 | 229 | 201 | 413 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-17 | 20 | 206 | 213 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-17 | 20 | 206 | 213 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-17 | 20 | 206 | 213 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-17 | 20 | 206 | 213 | 395 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000003 | 36 | 194 | 190 | 335 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO518422 | 213 | 20 | 229 | 0 |
CF417542 | 202 | 27 | 225 | 0 |
DN501330 | 213 | 20 | 229 | 0 |
CA784678 | 213 | 20 | 229 | 0 |
DR950180 | 213 | 20 | 229 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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