Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000296416 |
Family | GH28 |
Protein Properties | Length: 698 Molecular Weight: 75413.6 Isoelectric Point: 4.8031 |
Chromosome | Chromosome/Scaffold: 013855158 Start: 42344 End: 48269 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 247 | 572 | 0 |
ACAVESGVVLAPSDYCFKITSTIFSGPCQPGLVFQVDGVLMPPDGPETWPTTDSLNQWLVFYRLDQMTFTGTGTIEGNGQKWWELPCKPHRGPKGSTLPG PCDSPAMIRFFMSSNLVVRGLRIQNSPKFHMKFDGCEGVLIEKISISSPKLSPNTDGIHIENTKSVAIYDSMISNGDDCISIGTGCANVDIMGVTCGPSH GISIGSLGVHNSRACVSNITVRNAVIRESDNGARIKTWQGGTGCVSGILFENIQMENVLNCLLVDQYYCLSKGCLNQTSAVLVTDLTYRNIKGTYDVRTP PIHFACSDTVACRNITLSEVELYPHE |
Full Sequence |
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Protein Sequence Length: 698 Download |
MELVHWFRVL WITMTLLTFQ YASNVEGRYH YHKRNKSASP PPTPAEDRGS PSPPSIAPPT 60 XXEXPFAPPI PAEEPVAPST PSIAPPTPXE EPVAPPTPAE EPVAPSTPSI APPTPVEEPV 120 APPTPAEKPA APSTPSIAPP TPVEEPVAPP TPAEKPAAPS TPSIAPATPV EEPVAPPTPA 180 EKPVAPSTPS ITPPTPPPHV PSDPYPNDPG NNSSNSSDCV FNVMDYGAVG DGSADDTAAF 240 RQAWKEACAV ESGVVLAPSD YCFKITSTIF SGPCQPGLVF QVDGVLMPPD GPETWPTTDS 300 LNQWLVFYRL DQMTFTGTGT IEGNGQKWWE LPCKPHRGPK GSTLPGPCDS PAMIRFFMSS 360 NLVVRGLRIQ NSPKFHMKFD GCEGVLIEKI SISSPKLSPN TDGIHIENTK SVAIYDSMIS 420 NGDDCISIGT GCANVDIMGV TCGPSHGISI GSLGVHNSRA CVSNITVRNA VIRESDNGAR 480 IKTWQGGTGC VSGILFENIQ MENVLNCLLV DQYYCLSKGC LNQTSAVLVT DLTYRNIKGT 540 YDVRTPPIHF ACSDTVACRN ITLSEVELYP HEGELMDDPF CWNAYGIQET ATIPPIDCLQ 600 EGEPQVAAEE TKNMPSLQTA LPPELANNVI RLYRECLRRV KYVGHRIRRY GVTDAAYDLL 660 RVTNPRQIMQ FQKSWVQHAY TAPSVFHDKL CVNLFLVL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-74 | 221 | 595 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-74 | 221 | 574 | 359 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 268 | 568 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-91 | 222 | 568 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-108 | 220 | 595 | 381 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263668.1 | 0 | 207 | 611 | 71 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 205 | 609 | 75 | 476 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0.0001 | 1 | 81 | 1 | 72 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002519290.1 | 0 | 162 | 609 | 33 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 4e-21 | 222 | 586 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 1e-20 | 317 | 519 | 115 | 319 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-20 | 321 | 568 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 321 | 568 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 321 | 568 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |