| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000300492 |
| Family | PL1 |
| Protein Properties | Length: 455 Molecular Weight: 50667.3 Isoelectric Point: 7.2821 |
| Chromosome | Chromosome/Scaffold: 01755126 Start: 1705 End: 3929 |
| Description | VPS54 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 282 | 357 | 8.4e-23 |
| GHDEVMLLGHDDKYLPDSGMQVTIAFNHFSMALVQRMPRCRRGYIHVVNNNFTRWEMYAIGGSGNPTINSQGYHYI | |||
| Full Sequence |
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| Protein Sequence Length: 455 Download |
| MAAVSFQAAV TATTIAVDPS PKQRPRSPRC CNPTRNVLRS STTWRPISSS IFPTSDWPAY 60 SSPSGPATGN VTLWFADACA SHVTATPATV TDSASSAPSS FTSASIPPPE FAHLVPKSAS 120 DSMTRSDFQP YLASTGGQGE ALVACLREVP ALYYKDSAPE DGATFRSTCP FTNVPENLVL 180 QEKLSHYLDV VKLHLVKEIS LRSNSFFDSQ GQLQDLNVKI VEGCSRIQEL KDTILLMDVD 240 LVDCARQIHD LNETRRNLLA LQQKLRLILY ASGGAAEVML LGHDEVMLLG HDDKYLPDSG 300 MQVTIAFNHF SMALVQRMPR CRRGYIHVVN NNFTRWEMYA IGGSGNPTIN SQGYHYIAPQ 360 DQNAKEVTKC VDTNEGDWSD WNWRTERNGK DFRDNIQVIT KPAIRRLARR GGVKRISELI 420 YEETKSFLNI FLENVIRDAV TYTEHARRKT VTIMD |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00076 | H4 | 3.0e-29 | 387 | 455 | 69 | + Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution | ||
| smart00656 | Amb_all | 5.0e-30 | 282 | 359 | 78 | + Amb_all domain. | ||
| smart00417 | H4 | 1.0e-32 | 387 | 455 | 69 | + Histone H4. | ||
| PTZ00015 | PTZ00015 | 3.0e-33 | 387 | 455 | 69 | + histone H4; Provisional | ||
| PLN00035 | PLN00035 | 1.0e-35 | 385 | 455 | 71 | + histone H4; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000786 | nucleosome |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006334 | nucleosome assembly |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16926.1 | 0 | 102 | 281 | 75 | 279 | putative protein [Arabidopsis thaliana] |
| EMBL | CAN79629.1 | 0 | 102 | 286 | 71 | 287 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_193684.3 | 0 | 102 | 281 | 75 | 279 | protein binding [Arabidopsis thaliana] |
| RefSeq | XP_002272177.1 | 0 | 102 | 281 | 71 | 283 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002526977.1 | 0 | 106 | 281 | 76 | 276 | vacuolar protein sorting, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1aoi_F | 7e-31 | 386 | 455 | 1 | 70 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
| PDB | 1aoi_B | 7e-31 | 386 | 455 | 1 | 70 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
| PDB | 4j8x_F | 1e-30 | 387 | 455 | 17 | 85 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
| PDB | 4j8x_B | 1e-30 | 387 | 455 | 17 | 85 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
| PDB | 4j8w_F | 1e-30 | 387 | 455 | 17 | 85 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY667153 | 166 | 110 | 249 | 0 |
| EB140387 | 104 | 283 | 386 | 0 |
| GO527798 | 104 | 283 | 386 | 0 |
| DY653786 | 150 | 110 | 234 | 0 |
| CV151051 | 104 | 283 | 386 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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