Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000301545 |
Family | PL1 |
Protein Properties | Length: 454 Molecular Weight: 50363.2 Isoelectric Point: 8.6354 |
Chromosome | Chromosome/Scaffold: 015921316 Start: 39393 End: 41239 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 372 | 0 |
IQKQPLWIIFARSMVIRLTQELIVTSHKTIDARGANVHIAHGAGITLQFVQNVIIHGLHIHDTVPGNGGMIRDSVDHIGIRTHSDGDGISIYGSSNIWLD HLSMWNCADGLIDAIQGSTAITISNSHFTRHNDVMLFGASDGFSGDAIMQITVAFNHFGKGLIQRMPRCRWGFIHVVNNDYTHWLMYAIGGSSHPTIISQ GNRFIA |
Full Sequence |
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Protein Sequence Length: 454 Download |
MASKLNLALL MISFCMLVPS LKAETQNDTL NIAEFDSVWQ QRALKAQKAA LKAYQPNPEQ 60 VTEDFNESVE MTIIEDDHDD DHAAGNSTGR HLLGKRYTGP CKATNPIDRC WRCQANWADN 120 RKHLASCVKG FGRKTRGGKK GAYYIVTDSS DDNIHDPKPG TLRHAVIQKQ PLWIIFARSM 180 VIRLTQELIV TSHKTIDARG ANVHIAHGAG ITLQFVQNVI IHGLHIHDTV PGNGGMIRDS 240 VDHIGIRTHS DGDGISIYGS SNIWLDHLSM WNCADGLIDA IQGSTAITIS NSHFTRHNDV 300 MLFGASDGFS GDAIMQITVA FNHFGKGLIQ RMPRCRWGFI HVVNNDYTHW LMYAIGGSSH 360 PTIISQGNRF IAPPNQAAKE VTKRDYAPES VWKSWQWRSE GDLMINGAFF VQSGVPSKNH 420 GFGRLDVMKA RPGTYVTRLT RFAGSLNCKV GHPC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-7 | 31 | 92 | 62 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-24 | 187 | 370 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-53 | 185 | 370 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-64 | 180 | 374 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 454 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 454 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 16 | 454 | 19 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 454 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 454 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 105 | 444 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 105 | 444 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 174 | 361 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000005 | 188 | 370 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000007 | 186 | 370 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |