y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000302503 |
Family | PL1 |
Protein Properties | Length: 373 Molecular Weight: 41499.9 Isoelectric Point: 7.1126 |
Chromosome | Chromosome/Scaffold: 018243207 Start: 9677 End: 13906 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 159 | 364 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQYITNVIIHGLHIHDCKSTGNALVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 373 Download |
MAVSLNLFLL LLTMAVLLAL VASTNASSKS DKNVNSRFVG PKESLSSKNS SMAERSDEAL 60 DEHAVDNPDE IASMVDMTIR NSTERRNLGF FSCATGNPID DCWRCDPQWQ LHRKRLANCG 120 IGFGRNAVGG RDGRYYVVND PGNDDPVNPR PGTLRHAVIQ DRPLWIVFKR DMVITLKQEL 180 IMNSFKTIDA RGVNVHIAYG ACITIQYITN VIIHGLHIHD CKSTGNALVR SSPSHYGWRT 240 MADGDGISIF GSSHIWIDHN SLSNCADGLI DAIMGSTAIT ISNNYFTHHN EVMLLGHSDS 300 YVRDKLMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS AEPTINSQGN 360 RYLAPNNAFA KEV 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-24 | 184 | 360 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-66 | 177 | 362 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-77 | 171 | 366 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71208.1 | 0 | 25 | 373 | 28 | 377 | pectate lyase [Fragaria x ananassa] |
GenBank | AAK66160.1 | 0 | 25 | 373 | 28 | 377 | pectate lyase B [Fragaria x ananassa] |
GenBank | AAZ31564.1 | 0 | 25 | 373 | 28 | 377 | pectate lyase isoform 2 [Fragaria x ananassa] |
GenBank | AAZ31566.1 | 0 | 25 | 373 | 28 | 377 | pectate lyase isoform 4 [Fragaria x ananassa] |
GenBank | ABR26682.1 | 0 | 25 | 373 | 28 | 377 | pectate lyase [Fragaria chiloensis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 97 | 373 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 97 | 373 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 166 | 364 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 245 | 339 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000008 | 187 | 339 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |