| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000302815 |
| Family | PL1 |
| Protein Properties | Length: 348 Molecular Weight: 38697.3 Isoelectric Point: 8.4265 |
| Chromosome | Chromosome/Scaffold: 017440360 Start: 4223 End: 9398 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 174 | 345 | 0 |
| IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISR CXFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYYNYTRNWGIYAVCASVESQVN | |||
| Full Sequence |
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| Protein Sequence Length: 348 Download |
| MRCVCESDAS AFGADVAARV GVADPNSLIS FPYSKTQNRP LFFVPKPIWV QKPELLFFDE 60 NGGGNAGAGG NSGGWSRGGD GNSDDSSSSS SLVSGFGVLG KFLNRWRSRV AADPQFLFKV 120 LMEEVVGVSS CVLGDMASRP QFRPQRARLC LLDFRHDGPG SLREGCRKQX PLWIVFEVSG 180 TIHLSSYLSV SSYKTIDGRG QRIKLTGKGL RLKECEHIIV CNLEFEGGRG HDVDGIQIKP 240 NSRHIWIDRC SLRDYDDGLI DITRQSTDIT ISRCXFAQHD KTMLIGADPS HVGDRCIRVT 300 IHHCFFDGTR QRQPRLRFGK VHLYYNYTRN WGIYAVCASV ESQVNETS |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11891 | DUF3411 | 7.0e-10 | 108 | 142 | 35 | + Domain of unknown function (DUF3411). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. | ||
| pfam00544 | Pec_lyase_C | 1.0e-35 | 175 | 335 | 181 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-40 | 171 | 345 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-62 | 188 | 344 | 169 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK92527.1 | 0 | 157 | 344 | 29 | 216 | unknown [Populus trichocarpa] |
| EMBL | CAB75748.1 | 0 | 157 | 344 | 54 | 241 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 157 | 344 | 44 | 231 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_974439.1 | 0 | 157 | 344 | 20 | 207 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002526780.1 | 0 | 112 | 344 | 7 | 231 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1e-29 | 159 | 344 | 55 | 261 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1e-29 | 159 | 344 | 55 | 261 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 7e-25 | 175 | 327 | 49 | 212 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 6e-22 | 188 | 327 | 128 | 300 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 4e-18 | 195 | 344 | 82 | 239 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GT019596 | 188 | 157 | 344 | 0 |
| GR997119 | 188 | 157 | 344 | 0 |
| EB434087 | 189 | 157 | 345 | 0 |
| EG677033 | 233 | 112 | 344 | 0 |
| EE254692 | 233 | 112 | 344 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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