Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000304868 |
Family | GH18 |
Protein Properties | Length: 283 Molecular Weight: 30825.2 Isoelectric Point: 8.9374 |
Chromosome | Chromosome/Scaffold: 01702770 Start: 7320 End: 8561 |
Description | Glycosyl hydrolase family protein with chitinase insertion domain |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 143 | 270 | 3.9e-26 |
PNSNVNSIYGLKSWIKAGIPPVKLVMGLALYGRSWELQNPKNHSFGATAIGPGPGAGMLFYHQVETLLNQSGATVVYDVDTISVYSYNGSTWVSYDDAFT TAAKIVFAQALGLRGYFFWALSFDSDWK |
Full Sequence |
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Protein Sequence Length: 283 Download |
MAIHNFLHIL LLLCSLMIIN TGCTAEVPPA VKAAYYPSFS PDFPPSAINT SFFTHIFYAF 60 LVPNNVTFKF DLXNSTALLL SNFTTTLRHK TPPVKTLLSI GGAADGVVLP FVFARLASKA 120 SSRSQFIQSA IEVARPNAAL LNPNSNVNSI YGLKSWIKAG IPPVKLVMGL ALYGRSWELQ 180 NPKNHSFGAT AIGPGPGAGM LFYHQVETLL NQSGATVVYD VDTISVYSYN GSTWVSYDDA 240 FTTAAKIVFA QALGLRGYFF WALSFDSDWK ISAQASKSWI LDE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00704 | Glyco_hydro_18 | 2.0e-9 | 48 | 135 | 92 | + Glycosyl hydrolases family 18. | ||
smart00636 | Glyco_18 | 1.0e-21 | 136 | 266 | 142 | + Glyco_18 domain. | ||
pfam00704 | Glyco_hydro_18 | 6.0e-23 | 136 | 266 | 131 | + Glycosyl hydrolases family 18. | ||
cd02879 | GH18_plant_chitinase_class_V | 3.0e-27 | 28 | 135 | 108 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
cd02879 | GH18_plant_chitinase_class_V | 3.0e-30 | 136 | 272 | 137 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI25623.1 | 2e-33 | 5 | 135 | 8 | 130 | unnamed protein product [Vitis vinifera] |
EMBL | CBI25623.1 | 0 | 137 | 281 | 228 | 373 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324562.1 | 5e-35 | 28 | 135 | 27 | 131 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324562.1 | 0 | 137 | 283 | 229 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002335074.1 | 0 | 137 | 281 | 17 | 162 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3alf_A | 3e-26 | 138 | 279 | 200 | 345 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3alf_A | 0.000003 | 48 | 135 | 20 | 104 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3alg_A | 3e-26 | 138 | 279 | 200 | 345 | A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 |
PDB | 3alg_A | 0.000003 | 48 | 135 | 20 | 104 | A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 |
PDB | 3aqu_D | 4e-24 | 132 | 279 | 194 | 343 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |