| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000306185 |
| Family | GT47 |
| Protein Properties | Length: 1268 Molecular Weight: 143931 Isoelectric Point: 7.2952 |
| Chromosome | Chromosome/Scaffold: 018806168 Start: 21564 End: 28049 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT47 | 952 | 1261 | 0 |
| SCSGRYVYVYDLPKRFNQDLLKNCHSLMKWTDMCPHLSNMGLGPKIHSSTGKLVGNGWFATNQFSLGVIFHNRMKQYXCLTNDSSLASAVFVPFYAGLDV GRYLWDCNTSVRDASPLELVKWLSRRPEWKTMWGRDHFIVGGRIGWDFRRKTDDDSDWGSKLMLLPETKNMTMLSIEASCWNNDHAIPYPTYFHPSKDSE VFEWQRRMRKRKRRHLFSFAGAPRPDLKIRDLIIDQCKSSSKCKLVGCYKGAIRCDDPLNVMEAFQGSVFCLQPPGDSYTRRSTFDSILAGCIPVFFXPG SAYAQYLWHF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1268 Download |
| MAVICHPPEP FLFLLLKPFS SISSAAAAPL PLSNEPHDLS SQLFAILSRP NWQRHPSLKQ 60 LAPSISPSHV SSVFALXLDP RTALAFFNWI ALKPGYKHTV HCHSSLLNIL LPNGFLQVAE 120 KIRISMIKAS SSPQDALFVL KFLRELNGAG EFEFKLTLRC YNFLLMSLSK FSLLQDLKAL 180 YLEMLDDMVS PNLHTFNTMI NAYCKVGNVA EADLYFSRIG QAGFHPDTFT YTSLILGHCR 240 NKDVDSGYRV FKLMPQKGCQ RNEVSYTNLI HGFCEAXRID EALKLFSQMG EDXCFPTVRT 300 YTVLICALCK LGRKLEAMNL FKEMTDKGCE PNVHTYTVLI DSMCKENKLD EARNLLNKML 360 XKRLVPNVVT YNAMIDGYCK EGAVEAALGI LALMESSNCY PNARTYNELI CGFCKRKNIH 420 QAMALLGKML DRKLSPSLYT YNSLIHGQCX MGHFESAYRL LNLMKESGLV PDRWSYSSLI 480 DALCKRGRLE EAHALFDSLN EKGIKSNDVI FTSLIDGYCK VGKIDDAHSL FDRMLAEDCL 540 PNSFTYNTLI DVLCKEERLE EAFSLVEKML SIGXKATTHT YTILIKQMLK EGDFDHARRL 600 LNQMVSSGNQ PDLFTYTTFI HAYCGIGNVE EAEKLMMKMN EEGIIADSLT YTLLIDGYGR 660 MRLIDCAFDV LKRMFDSCCD PSHFTYSFLI KHLSNEKLTE TNNNMVGIDL FSKVSLIDIS 720 DVWKTMDFDI ALELFEKMAG HGCAPSTNTY EKLIVGLCKE RRLEVAQRLY SHMRERKISS 780 SENIYNSLLN CCCTLQKYGE AATLVDAMIK DGYLPTLESS TMLVCGLLDE EKTEKAKAIF 840 RTLLLCEYNH DEVAWKVLFD GLLKRGFVNI CSELISIMEK MGCQLHPQTY SMLIEGMDGE 900 YDTGFVVFAV FICAVNMQSL QQAQSSGRVT KAPVQPISDE IEKXNAGFDS DSCSGRYVYV 960 YDLPKRFNQD LLKNCHSLMK WTDMCPHLSN MGLGPKIHSS TGKLVGNGWF ATNQFSLGVI 1020 FHNRMKQYXC LTNDSSLASA VFVPFYAGLD VGRYLWDCNT SVRDASPLEL VKWLSRRPEW 1080 KTMWGRDHFI VGGRIGWDFR RKTDDDSDWG SKLMLLPETK NMTMLSIEAS CWNNDHAIPY 1140 PTYFHPSKDS EVFEWQRRMR KRKRRHLFSF AGAPRPDLKI RDLIIDQCKS SSKCKLVGCY 1200 KGAIRCDDPL NVMEAFQGSV FCLQPPGDSY TRRSTFDSIL AGCIPVFFXP GSAYAQYLWH 1260 FPNDPSKY |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03218 | PLN03218 | 6.0e-25 | 196 | 520 | 330 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 2.0e-27 | 276 | 681 | 409 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 4.0e-32 | 434 | 804 | 389 | + maturation of RBCL 1; Provisional | ||
| PLN03218 | PLN03218 | 1.0e-37 | 239 | 613 | 382 | + maturation of RBCL 1; Provisional | ||
| pfam03016 | Exostosin | 1.0e-61 | 952 | 1262 | 324 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN80799.1 | 0 | 2 | 880 | 5 | 881 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN80799.1 | 0 | 73 | 648 | 306 | 888 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN80799.1 | 0 | 328 | 896 | 96 | 658 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN80799.1 | 1.99965e-42 | 457 | 897 | 143 | 554 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276453.1 | 0 | 2 | 898 | 5 | 888 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EL456596 | 268 | 1000 | 1264 | 0 |
| JG466013 | 261 | 45 | 304 | 0 |
| JG466013 | 172 | 385 | 549 | 5e-18 |
| JG466013 | 236 | 215 | 444 | 0.00000000002 |
| JG466013 | 131 | 524 | 654 | 0.0000000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
