Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000307094 |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 43666.2 Isoelectric Point: 8.419 |
Chromosome | Chromosome/Scaffold: 018226191 Start: 10699 End: 13772 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 386 | 0 |
KEACQWNGRARVVVPRGTFKLYPVIFSGPCNGPIAFLIEGTLRASIDPSTFSTDSWINFRYINQLVVTGGGTLDGQGASAWHLNNCKTNPQCQALPISMS FDFITNARVEYIKSYDSKNAHFKIFGCHNMDFRKIKVSAPADSPNTDGIKIGSSYRIRIARSTIATGDDCVAVVTGSKKIHISKVVCGPGHGISIGSLGG HDKEDAVVGVVVKNCTFLGTENGVRIKTWASPYTSXASNFTFQDIFMDDVLNPITIDQEYCPNPPCHQQTSSNVQISDVTYKNIWGTSSSEVAVSLRCSK SRPCKNVVLDIIKLSPSNPRERLSSFCFYA |
Full Sequence |
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Protein Sequence Length: 400 Download |
MGMGLIISXL GRSFLLFFSL VWVTEALDQA KYFNVRNYGA VEGGEADNSK AFLEAWKEAC 60 QWNGRARVVV PRGTFKLYPV IFSGPCNGPI AFLIEGTLRA SIDPSTFSTD SWINFRYINQ 120 LVVTGGGTLD GQGASAWHLN NCKTNPQCQA LPISMSFDFI TNARVEYIKS YDSKNAHFKI 180 FGCHNMDFRK IKVSAPADSP NTDGIKIGSS YRIRIARSTI ATGDDCVAVV TGSKKIHISK 240 VVCGPGHGIS IGSLGGHDKE DAVVGVVVKN CTFLGTENGV RIKTWASPYT SXASNFTFQD 300 IFMDDVLNPI TIDQEYCPNP PCHQQTSSNV QISDVTYKNI WGTSSSEVAV SLRCSKSRPC 360 KNVVLDIIKL SPSNPRERLS SFCFYAKGAS YGLQAPPSCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-76 | 23 | 370 | 354 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-83 | 33 | 400 | 370 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-87 | 31 | 400 | 377 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-90 | 60 | 371 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-113 | 33 | 399 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 31 | 400 | 33 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 31 | 400 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 3 | 400 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 31 | 399 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 10 | 400 | 1 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-16 | 80 | 371 | 51 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-16 | 126 | 343 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 126 | 343 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-16 | 126 | 343 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-16 | 126 | 343 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |