Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000315307 |
Family | PL4 |
Protein Properties | Length: 505 Molecular Weight: 56001 Isoelectric Point: 5.7488 |
Chromosome | Chromosome/Scaffold: 02247643 Start: 596 End: 5628 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 280 | 467 | 0 |
TNPRNPELNGEVDDKYQYSSNVKDIKVHGWISTDDAIGLWMITPSTEFRSAGPFKQELTSHVGPTTLTVFLSSHYLGKDVGLTFAEGEAWKKVFGPLFVY LNSDVRSSNASFSLWENAKEQMYEEVKSWLYNFTQSEDFPSSDGRGSVSGQLLIRDSHINESLVSASYAYVGLAARGYAGSWQTEELG |
Full Sequence |
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Protein Sequence Length: 505 Download |
MASLTSLFTT LSKSSHVGAA IARNATSTPR IFLATAPRRR IQASSQQDAP AIENEARNAA 60 ENVSQTTKXM AGKVSATAQD VSEKAXQTAQ DAWSQAKGTA QKATDTVMGK AEESKEFVKE 120 NAEQVFPISN VSTIGEKLTY TTGMHXDCAS GRRAPRSVTG NELNFNQMLT QQTHNTVELN 180 KGIVRVTFSN PRGDVIGIEY KGIDNLLEIK NLPSNRGYWD LVWKNGLDRL QGTTFKIVTL 240 TADQIEISFN KTYDDSLGDW TLPLNPKIAT ETTFRPLPLT NPRNPELNGE VDDKYQYSSN 300 VKDIKVHGWI STDDAIGLWM ITPSTEFRSA GPFKQELTSH VGPTTLTVFL SSHYLGKDVG 360 LTFAEGEAWK KVFGPLFVYL NSDVRSSNAS FSLWENAKEQ MYEEVKSWLY NFTQSEDFPS 420 SDGRGSVSGQ LLIRDSHINE SLVSASYAYV GLAARGYAGS WQTEELGLLG KFIQIFDFMK 480 DWGYSEELGK VLQYILKFFL NISSL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09284 | RhgB_N | 0.003 | 288 | 340 | 53 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
cd10316 | RGL4_M | 0.0005 | 423 | 467 | 45 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 6.0e-26 | 174 | 265 | 97 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 3.0e-41 | 179 | 383 | 260 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172460.6 | 0 | 179 | 464 | 1 | 358 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002301112.1 | 0 | 179 | 464 | 1 | 356 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 167 | 467 | 7 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306520.1 | 0 | 179 | 464 | 1 | 356 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527357.1 | 0 | 169 | 467 | 8 | 378 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR828586 | 186 | 279 | 464 | 0 |
GR150158 | 189 | 279 | 467 | 0 |
GW864372 | 189 | 279 | 467 | 0 |
EG691325 | 209 | 254 | 462 | 0 |
GW430189 | 173 | 279 | 451 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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