| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000319015 |
| Family | GH5 |
| Protein Properties | Length: 906 Molecular Weight: 101289 Isoelectric Point: 4.9917 |
| Chromosome | Chromosome/Scaffold: 02542733 Start: 1110 End: 11517 |
| Description | RING/U-box superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 613 | 895 | 3.8e-39 |
| LKRHRNSFITVGDFSFLYRHGINTVRXPVGWWIAYDPDPPAPFIGGTLEALDNAFSWAQAYNIKCIIDLHAAPGSQNGMEHSASRDGSTDWPNPDYISQT LHVIDFLASRYARHPALLGIELLNEPSAAAVPLDTLVSYYKQGYQIVRKYSSAXYVIVCQRIGNADPLELYQANIXSHHLVVDLHYYNLFDNFFVNMSAV DNMQFIYKSREAQLQALNSANGPLVLIGEWVNEWNVTNGSQTDYQDFGRVQLEVYNLASFGWAYWTLKNDRPHWDFEWNIKNN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 906 Download |
| MEFDHRNFLA PTNLSEQLAC SLXCXPLWNK GGYCFESCFK TCPAVCKNLV VYAGSQLAPP 60 IVPNPPTPPC TPPPTLTDER KQLIETSMTI TICTIGAALL LAIVFSIVRF YRRRRRNNSS 120 RSRSLPILFD AQQDFIDEDH GPVLDHPIWY IQTVGLPQSV IDSITVCKFR KDEGLIEGTD 180 CSVCLNEFEE DESLRLLPKC SHAFHIPCID TWLRSHKNCP LCRAPIVYDT GSAQVSVPEP 240 VSSGSGSRDS GEVENLEGDG GAESVGSWTN EVGAGEXGNV SVIPIEGRAA ESSRKFLRNS 300 IVPVGSCDPR AFSDLTDNRR VTEEDXQPMR RSVSMDSMSA LRIYRDVAKE ASTKILHGGF 360 GGXEYKPSCL DSGSPFVADG LYILXFWMLL RPAFLMELVL TKWVCAFLLC CWLFVSGVYS 420 VEGLRGDSKV RGVNLGGWLV VEGWIKPSLF DDIPNEDMLD GTQVQLKSVT LEKYVSAENG 480 GGMNVSVDRD IASSWETFRL WRVSESEFQF RTLQGQFLTC DGEGCFFSAT AEPPPTLGTF 540 XIERNNNGRV HIRTINGTYL QATLQTQLTA DYPGKPGWED NAATFEITIV ANTLHGDYQL 600 TNGYGYSKAK DILKRHRNSF ITVGDFSFLY RHGINTVRXP VGWWIAYDPD PPAPFIGGTL 660 EALDNAFSWA QAYNIKCIID LHAAPGSQNG MEHSASRDGS TDWPNPDYIS QTLHVIDFLA 720 SRYARHPALL GIELLNEPSA AAVPLDTLVS YYKQGYQIVR KYSSAXYVIV CQRIGNADPL 780 ELYQANIXSH HLVVDLHYYN LFDNFFVNMS AVDNMQFIYK SREAQLQALN SANGPLVLIG 840 EWVNEWNVTN GSQTDYQDFG RVQLEVYNLA SFGWAYWTLK NDRPHWDFEW NIKNNXLQLG 900 NFLGLM |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG5540 | COG5540 | 3.0e-11 | 143 | 226 | 97 | + RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] |
| cd00162 | RING | 1.0e-12 | 180 | 226 | 48 | + RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) |
| pfam00150 | Cellulase | 2.0e-15 | 633 | 882 | 264 | + Cellulase (glycosyl hydrolase family 5). |
| pfam13639 | zf-RING_2 | 9.0e-16 | 180 | 225 | 46 | + Ring finger domain. |
| COG2730 | BglC | 5.0e-24 | 593 | 892 | 334 | + Endoglucanase [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030674 | protein binding, bridging |
| GO:0051015 | actin filament binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI33153.1 | 0 | 376 | 901 | 40 | 566 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262875.1 | 0 | 378 | 901 | 30 | 552 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310872.1 | 0 | 430 | 900 | 1 | 474 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002438060.1 | 0 | 404 | 897 | 6 | 509 | hypothetical protein SORBIDRAFT_10g007500 [Sorghum bicolor] |
| RefSeq | XP_002533566.1 | 0 | 421 | 901 | 8 | 489 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3n9k_A | 8e-28 | 597 | 889 | 50 | 375 | A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From Candida Albicans In Complex With Laminaritriose At 1.7 A |
| PDB | 1eqp_A | 1e-27 | 597 | 889 | 45 | 370 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
| PDB | 2pc8_A | 2e-27 | 597 | 889 | 51 | 376 | A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans In Complex With Two Separately Bound Glucopyranoside Units At 1.8 A |
