Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000319235 |
Family | PL1 |
Protein Properties | Length: 322 Molecular Weight: 35647.4 Isoelectric Point: 8.2851 |
Chromosome | Chromosome/Scaffold: 001010290 Start: 18793 End: 21442 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 231 | 3.7e-36 |
SLRDYEDGLIDISRGSTNITISRCHFSQHDKTILIGADPSHIDDRCIRVTIHHCFFDGTRQRYPRVRFAKVHLYNNYTRNWGIYVVCASVESHIFSECNI YEA |
Full Sequence |
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Protein Sequence Length: 322 Download |
MGNCHGHHRK RRNGPVSSET ASSGFKYGLS GQAAQIPCSS SSSAKRTSNM VVALLYAHVD 60 SILRALASQA EGFGRLTVGG LNGAVYHVTT LADDGPGSLR EGCRKKEPLW IVFEISGTIH 120 LQSHLNISSL RDYEDGLIDI SRGSTNITIS RCHFSQHDKT ILIGADPSHI DDRCIRVTIH 180 HCFFDGTRQR YPRVRFAKVH LYNNYTRNWG IYVVCASVES HIFSECNIYE AGKKKVAFKY 240 LTEKAADKET AVTGHIRSEG DLFVTGTQAG LSPDGGEHCM FHPTQHYQTW TKGPPVDDLM 300 HVLQHCTXWQ GVPRPXDQXV AT |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 5.0e-25 | 134 | 227 | 94 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 4.0e-26 | 135 | 276 | 145 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 4.0e-38 | 121 | 233 | 113 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK93648.1 | 0 | 1 | 321 | 1 | 384 | unknown [Populus trichocarpa] |
GenBank | ABK96132.1 | 0 | 1 | 322 | 1 | 388 | unknown [Populus trichocarpa] |
EMBL | CBI32661.1 | 0 | 54 | 318 | 4 | 325 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002309435.1 | 0 | 50 | 322 | 1 | 332 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323433.1 | 0 | 50 | 321 | 1 | 331 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 4e-19 | 128 | 266 | 166 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_B | 0.00005 | 66 | 128 | 21 | 87 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 4e-19 | 128 | 266 | 166 | 306 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0.00005 | 66 | 128 | 21 | 87 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 0.00000000000001 | 135 | 229 | 229 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB128596 | 197 | 125 | 321 | 0 |
EB144088 | 176 | 146 | 321 | 0 |
EB142871 | 176 | 146 | 321 | 0 |
CV150238 | 175 | 147 | 321 | 0 |
EB143809 | 172 | 146 | 317 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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