Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000321745 |
Family | GH28 |
Protein Properties | Length: 522 Molecular Weight: 57567 Isoelectric Point: 7.9177 |
Chromosome | Chromosome/Scaffold: 009959204 Start: 662 End: 3741 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 183 | 474 | 0 |
DAAAGRYTSLIWGTNLTDVVVTGDNGTIDGQGEFWWQQFHKKKLKYTRPYLIEIMFSTDVQISNLTLLNSPSWNVHPVYSSNILVKGITIIAPISSPNTD GINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTKQLVVRRLTCISPYSATIALGSEMSGGIQDVRAEDIVAIHTESGVRIKTAVGRGGYVKD IYARRFTMHTMKWAFWMTGNYGSHADDKYDKNALPEIKNINYRDMVADNVTMAARLEGIADHPFTGICISNVTIGLAVKAKKQPWTCTDIEG |
Full Sequence |
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Protein Sequence Length: 522 Download |
MELLGRXPMK TQVIIKLVLV VLLVVAMLRG AESRRAKGKI FESFEYTAMN CRAHSASLTD 60 FGGVGDGKTS NTKAFHAAVS QLSQYETQGG AQLFVPAGKW LTGSFNLTSH FTLYLHKDAV 120 LLASQRDWDV GLNYTRLRLK QHYLEFKVEG ASLKAWAGAG ADALDINEWP VLKALPSYGR 180 GRDAAAGRYT SLIWGTNLTD VVVTGDNGTI DGQGEFWWQQ FHKKKLKYTR PYLIEIMFST 240 DVQISNLTLL NSPSWNVHPV YSSNILVKGI TIIAPISSPN TDGINPDSCT NTRIEDCYIV 300 SGDDCVAVKS GWDEYGIAFG MPTKQLVVRR LTCISPYSAT IALGSEMSGG IQDVRAEDIV 360 AIHTESGVRI KTAVGRGGYV KDIYARRFTM HTMKWAFWMT GNYGSHADDK YDKNALPEIK 420 NINYRDMVAD NVTMAARLEG IADHPFTGIC ISNVTIGLAV KAKKQPWTCT DIEGITSGVT 480 PRPCDLLPDQ GAEKAKXCDF PADDLPIDRV ELKQCTYRMS SX |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03003 | PLN03003 | 1.0e-20 | 196 | 481 | 293 | + Probable polygalacturonase At3g15720 |
PLN02218 | PLN02218 | 5.0e-26 | 55 | 485 | 444 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 8.0e-29 | 192 | 472 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 2.0e-55 | 56 | 390 | 346 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 37 | 517 | 44 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 15 | 517 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 37 | 517 | 32 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 28 | 520 | 17 | 468 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 519 | 1 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7.9874e-44 | 54 | 456 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7.9874e-44 | 54 | 456 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7.9874e-44 | 54 | 456 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7.9874e-44 | 54 | 456 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000003 | 208 | 430 | 117 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |