| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000322627 |
| Family | PL1 |
| Protein Properties | Length: 382 Molecular Weight: 42192.5 Isoelectric Point: 8.3131 |
| Chromosome | Chromosome/Scaffold: 015129271 Start: 16513 End: 19134 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 112 | 291 | 0 |
| IVFEISGTIHLQSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDYEDGLIDITRGSTDITISR CHFSQHDKTMLIGSDPSHIDDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSECNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 382 Download |
| MGNSHGHHRK RRNGPGSSET ANSGFKYGPS DQAAQIPSSS STSAKKTSSS MVVALPYAHV 60 DSSLRALSAQ AEGFGRLAIG GLHGAVYHVT TLADDGPGSL REGCRQKEPL WIVFEISGTI 120 HLQSYLNVSS YKTIDGRGQR IKLTGKGLRL KECEHVIVCN LEFEGGRGPD VDGIQIKPNS 180 KHIWIDRCSL RDYEDGLIDI TRGSTDITIS RCHFSQHDKT MLIGSDPSHI DDRCIRVTIH 240 HCFFDGTRQR HPRVRFAKVH LYNNYTRNWG IYAVCASVES QIFSECNIYE AGQKKVAFKY 300 LTEKAADKET PMTGHIKSEG DLFVTGTQAG LSPDGGEHCV FHPTQHYQTW TKGPPVDDLK 360 HVLQHCAGWQ CVPRPADQGL AK |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 3.0e-39 | 107 | 287 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-47 | 80 | 368 | 315 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-67 | 126 | 292 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 381 | 1 | 384 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 381 | 1 | 387 | unknown [Populus trichocarpa] |
| EMBL | CBI32661.1 | 0 | 55 | 379 | 4 | 326 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 51 | 381 | 1 | 331 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 51 | 381 | 1 | 331 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-40 | 61 | 348 | 15 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-40 | 61 | 348 | 15 | 328 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmw_A | 8e-25 | 108 | 355 | 46 | 300 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3vmv_A | 8e-25 | 108 | 355 | 46 | 300 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| PDB | 3zsc_A | 1e-24 | 79 | 289 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY289690 | 326 | 25 | 349 | 0 |
| DY275282 | 333 | 52 | 382 | 0 |
| JG177860 | 304 | 72 | 375 | 0 |
| DY271752 | 298 | 25 | 322 | 0 |
| DY271752 | 29 | 322 | 350 | 1.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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