y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000326734 |
Family | GH28 |
Protein Properties | Length: 461 Molecular Weight: 49658.4 Isoelectric Point: 7.3344 |
Chromosome | Chromosome/Scaffold: 004966443 Start: 6091 End: 8484 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 448 | 0 |
WKAACSSSGAMVLVVPXKNYLVRPIEFSGPCKSQLTLQIYGTIEASEDRSIYKDIDHWLIFDNVQNLLVVGPGTINGNGNIWWKNSCKIKPQPPCGTYAP TAVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASXLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISIVSGSQRVQATDITCGPGHGISIG SLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWKGGSGSXTNIVFQNVQMNDVTNPIIIDQNYCDHKTKDCKQQKSAVQVKNVLYQNIRGTSASGDAITL NCSQSVPCQGIVLQSVQLQNGRAECNNV |
Full Sequence |
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Protein Sequence Length: 461 Download |
MALKTQLLWS FVVVFVVSFS TTSCSGSSFQ EVNALHSYVD HVDDKESGYN SRAYPSYTDT 60 IEXLKXMELI RPRTQLFSSR KLNTITGGIA TSSAPAKTIS VDDFGAKGNG ADDTQAFVKA 120 WKAACSSSGA MVLVVPXKNY LVRPIEFSGP CKSQLTLQIY GTIEASEDRS IYKDIDHWLI 180 FDNVQNLLVV GPGTINGNGN IWWKNSCKIK PQPPCGTYAP TAVTFNRCNN LVVKNLNIQD 240 AQQIHVIFQN CINVQASXLT VTAPEDSPNT DGIHVTNTQN ITISSSVIGT GDDCISIVSG 300 SQRVQATDIT CGPGHGISIG SLGEDGSEDH VSGVFVNGAK LSGTSNGLRI KTWKGGSGSX 360 TNIVFQNVQM NDVTNPIIID QNYCDHKTKD CKQQKSAVQV KNVLYQNIRG TSASGDAITL 420 NCSQSVPCQG IVLQSVQLQN GRAECNNVQP AYKGVVSPRC X 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-85 | 96 | 451 | 368 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 6.0e-105 | 77 | 459 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-117 | 125 | 448 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-137 | 97 | 458 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-157 | 98 | 460 | 367 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22688.1 | 0 | 1 | 460 | 1 | 460 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42033.1 | 0 | 1 | 460 | 1 | 459 | polygalacturonase2 [Pyrus communis] |
EMBL | CAA54448.1 | 0 | 1 | 460 | 1 | 452 | polygalacturonase [Prunus persica] |
EMBL | CAH18929.1 | 0 | 1 | 460 | 1 | 460 | polygalacturonase [Pyrus communis] |
Swiss-Prot | P48978 | 0 | 1 | 460 | 1 | 460 | PGLR_MALDO RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-25 | 173 | 438 | 97 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000001 | 195 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 195 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 195 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 195 | 448 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |