y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000394944 |
Family | PL1 |
Protein Properties | Length: 412 Molecular Weight: 45098.7 Isoelectric Point: 7.1184 |
Chromosome | Chromosome/Scaffold: 016055116 Start: 4396 End: 6190 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 124 | 330 | 0 |
VIQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLNIHDCKQGGNAMVRNSPEHFGWRTISDGDGVSIFGGSHVWV DHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRFAA |
Full Sequence |
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Protein Sequence Length: 412 Download |
MARPSSGPSL LSLLLFSLLS PTLISCRPLH LQDPELVVQE VQRNISDSVS RRNLGYLSCG 60 TGNPIDDCWR CDPNWEKNRQ RLADCAIGFG KNAIGGRDGK LYVVTDSGDD DAVNPKPGTL 120 RHAVIQDEPL WIIFQRDMTI QLKEELIMNS FKTIDGRGAS VHIAGGPCIT IQFVTNIIIH 180 GLNIHDCKQG GNAMVRNSPE HFGWRTISDG DGVSIFGGSH VWVDHCSLSN CKDGLIDAIH 240 GSTAITISNN YMTHHDKVML LGHSDSYTQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV 300 VNNDYTHWEM YAIGGSANPT INSQGNRFAA PDIRFSKEVT KHEDAPESEW KNWNWRSEGD 360 LMLNGAFFRA SGAGASSSYA RASSLGARPS SLVGSITTTA GALSCRKGSH C* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-27 | 150 | 328 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-74 | 143 | 328 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-81 | 137 | 332 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 1 | 411 | 4 | 418 | pectate lyase [Malus x domestica] |
GenBank | ABV32549.1 | 0 | 1 | 411 | 1 | 413 | pectase lyase [Prunus persica] |
DDBJ | BAE48664.1 | 0 | 1 | 411 | 1 | 413 | Pectate lyase [Prunus mume] |
DDBJ | BAF43572.1 | 0 | 1 | 411 | 1 | 413 | pectate lyase [Prunus persica] |
RefSeq | XP_002322215.1 | 0 | 20 | 411 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 63 | 404 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 63 | 404 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1bn8_A | 2e-16 | 135 | 404 | 135 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 6e-16 | 135 | 404 | 135 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
PDB | 3krg_A | 0.000000000000001 | 135 | 404 | 114 | 387 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |