Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000432773 |
Family | GH28 |
Protein Properties | Length: 491 Molecular Weight: 53808.3 Isoelectric Point: 7.8371 |
Chromosome | Chromosome/Scaffold: 011435428 Start: 3326 End: 6861 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 133 | 459 | 0 |
RDACSSPWPAKVVIPEGEYYLRGAILHGPCKSPIEVQVQGYLRAPQESSQLLQQNTWVGFQYVDRLTLFGGGTFDGQSNCHKYKSCQSNRVFNLRFDFVT NSVIEGITSLDSKNFHINVFACRNVTFQYVTITAPEDSVNTDGIHIGRSFGVTIDHTIIGTGDDCISLGDGSQNIVVTXVTCGPGHGISIGSLGKYPDEE PVVGVRVKNCTLTNTQNGVRIKTWPGSPTFTTASHIHFQXIXMVNVSNPISIDQEYCPYTYCGKDDPSKVKISDISFTNIKGSSATPVAVKLMCSRKIPC DGVGLTDVDLTYIGSKGPLTSQCAYVK |
Full Sequence |
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Protein Sequence Length: 491 Download |
MLTFESLAET FEFARKWVPF CKKYFSIKSC APEFYFSQKI DYLKDKVQQS FVKERRAMKN 60 STVHPKLQRI VDNSSDSMQS SSISHSQATS SSCRSNLMAS IANAKAEVFY VTNSTYGGNP 120 SGDITLALAD AWRDACSSPW PAKVVIPEGE YYLRGAILHG PCKSPIEVQV QGYLRAPQES 180 SQLLQQNTWV GFQYVDRLTL FGGGTFDGQS NCHKYKSCQS NRVFNLRFDF VTNSVIEGIT 240 SLDSKNFHIN VFACRNVTFQ YVTITAPEDS VNTDGIHIGR SFGVTIDHTI IGTGDDCISL 300 GDGSQNIVVT XVTCGPGHGI SIGSLGKYPD EEPVVGVRVK NCTLTNTQNG VRIKTWPGSP 360 TFTTASHIHF QXIXMVNVSN PISIDQEYCP YTYCGKDDPS KVKISDISFT NIKGSSATPV 420 AVKLMCSRKI PCDGVGLTDV DLTYIGSKGP LTSQCAYVKP YITRVANALA CATCETQILI 480 KHLEPSMNSI * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 1.0e-74 | 111 | 442 | 344 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 1.0e-80 | 101 | 455 | 362 | + polygalacturonase |
PLN02793 | PLN02793 | 3.0e-81 | 108 | 442 | 345 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 3.0e-113 | 136 | 459 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 2.0e-120 | 93 | 459 | 381 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0016020 | membrane |
GO:0016760 | cellulose synthase (UDP-forming) activity |
GO:0030244 | cellulose biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR26683.1 | 0 | 109 | 473 | 34 | 403 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 99 | 471 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 99 | 471 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 123 | 471 | 41 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 104 | 471 | 23 | 393 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.000000000000003 | 272 | 457 | 165 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 0.00000000000004 | 239 | 426 | 139 | 329 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000004 | 239 | 426 | 139 | 329 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1bhe_A | 0.000000000004 | 200 | 408 | 113 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000005 | 234 | 427 | 111 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC885548 | 281 | 116 | 390 | 0 |
CU617067 | 297 | 100 | 387 | 0 |
EC987202 | 280 | 110 | 381 | 0 |
CX191860 | 290 | 163 | 444 | 0 |
DY292761 | 281 | 116 | 390 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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