Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000448747 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 51671.3 Isoelectric Point: 9.6768 |
Chromosome | Chromosome/Scaffold: 002470355 Start: 6512 End: 18291 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 123 | 433 | 0 |
EKACSSERGVELVVPKDRVYHLKPMNFSGPCKSHVTLKIYGTIKASTKRSDYTDRRHWILFTNLNNFTVEGGGTINGNGRKWWQNSCKVNESLAVTFFGC NTLEVDNVRFRNAQQMHLSFESCVNVKASNLIVTAPGDSPNTDGIHVTATQNIRISNCLIRTGDDCISIVSGSKNVRAEDITCGPGHGISIGSLGAGNSQ AEVSDVVVSRAKITGTTNGLRIKTWQGGSGNATNIRYKNVMMANVSNPIIIDQHYCDQDSPCQEQDSAVKISNVVYENVKGTSASKVAVKFDCSKRFGCQ EILLKDVNLRP |
Full Sequence |
---|
Protein Sequence Length: 466 Download |
MGMVPRVWLR LKEDKRKERG LPIGRRGRRE DQSEKKERMG NEGREKKRTS QPGFSIRPSS 60 LTRFYLLRSI DLGNPLVVLD LHRHHRTRRL QSTSANNFTV NVDRFGAKGD GGDDTQAFMK 120 AWEKACSSER GVELVVPKDR VYHLKPMNFS GPCKSHVTLK IYGTIKASTK RSDYTDRRHW 180 ILFTNLNNFT VEGGGTINGN GRKWWQNSCK VNESLAVTFF GCNTLEVDNV RFRNAQQMHL 240 SFESCVNVKA SNLIVTAPGD SPNTDGIHVT ATQNIRISNC LIRTGDDCIS IVSGSKNVRA 300 EDITCGPGHG ISIGSLGAGN SQAEVSDVVV SRAKITGTTN GLRIKTWQGG SGNATNIRYK 360 NVMMANVSNP IIIDQHYCDQ DSPCQEQDSA VKISNVVYEN VKGTSASKVA VKFDCSKRFG 420 CQEILLKDVN LRPLANGIAQ ASWKTYPEDE CSQGRLEGYD PSTYQ* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-95 | 93 | 442 | 354 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 5.0e-103 | 95 | 444 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-117 | 126 | 431 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-140 | 102 | 446 | 356 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-144 | 99 | 432 | 344 | + polygalacturonase ADPG |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 99 | 441 | 89 | 438 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 99 | 441 | 89 | 438 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 99 | 442 | 8 | 359 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 79 | 431 | 57 | 419 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 78 | 432 | 89 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 180 | 431 | 102 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-20 | 181 | 407 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-20 | 181 | 407 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-20 | 181 | 407 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-20 | 181 | 407 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EE093402 | 253 | 176 | 421 | 0 |
EE091344 | 244 | 196 | 432 | 0 |
EX261408 | 258 | 99 | 348 | 0 |
EH769878 | 257 | 130 | 378 | 0 |
EX261408 | 36 | 345 | 380 | 0.00006 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|