Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000470297 |
Family | GH28 |
Protein Properties | Length: 485 Molecular Weight: 53180.2 Isoelectric Point: 6.5621 |
Chromosome | Chromosome/Scaffold: 016102191 Start: 20170 End: 23060 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 441 | 0 |
EACAVKSGVVFAPSDYRFKITSTIFSGPCQPGLVFQVDGVLMPPDGPATWPKKDSKQQWLVFYKLNRMTFTGTGTIEGNGQKWWALPCKPHRGPNGSTLR GPCDSPAMIRFFMSSNLVVRGLRIQNSPQFHMKFDGCVGVLIQKISISSPKLSPNTDGIHIENTKSVAIHNSVISNGDDCISIGTGCANVDIMGVTCGPS HGIRYVHNIGSLGVHNSQACVSNITVRNSVIRESDNGLRIKTWQGGTGSVSGILFENIQMENVLNCLLVDQYYCLSQACRNETSAVLVTDLTYRNIKGTY DVRRPPIHFACSDTVACRNIILSEVELYPYE |
Full Sequence |
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Protein Sequence Length: 485 Download |
MELFHWFRLL WIAMTLLTFR CASNVEGRYH HQKRNKNSSP PTTPAEDPVA PSTPSIAPPT 60 PPRDVPSDPY PTDPGNNFSN SSDCVFNVMD YGAVGDGSAD DTAAFRQAWK EACAVKSGVV 120 FAPSDYRFKI TSTIFSGPCQ PGLVFQVDGV LMPPDGPATW PKKDSKQQWL VFYKLNRMTF 180 TGTGTIEGNG QKWWALPCKP HRGPNGSTLR GPCDSPAMIR FFMSSNLVVR GLRIQNSPQF 240 HMKFDGCVGV LIQKISISSP KLSPNTDGIH IENTKSVAIH NSVISNGDDC ISIGTGCANV 300 DIMGVTCGPS HGIRYVHNIG SLGVHNSQAC VSNITVRNSV IRESDNGLRI KTWQGGTGSV 360 SGILFENIQM ENVLNCLLVD QYYCLSQACR NETSAVLVTD LTYRNIKGTY DVRRPPIHFA 420 CSDTVACRNI ILSEVELYPY EGELMDDPFC WNAYGTQETA TIPPIDCLRE GEPQALDEVS 480 KYTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-69 | 77 | 468 | 394 | + polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-76 | 73 | 464 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 133 | 437 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 6.0e-90 | 87 | 437 | 357 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-111 | 81 | 464 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 484 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 484 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 22 | 484 | 21 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 484 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 484 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-21 | 143 | 437 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-21 | 143 | 437 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-21 | 143 | 437 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-21 | 143 | 437 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-21 | 143 | 437 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |