| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000474161 |
| Family | CE8 |
| Protein Properties | Length: 393 Molecular Weight: 43321.6 Isoelectric Point: 8.3752 |
| Chromosome | Chromosome/Scaffold: 007551161 Start: 1049 End: 5590 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 88 | 382 | 0 |
| IMVDVNGSGDFQSVQSAVNAVPVNNTVNIVILIKPGCYIEKVVVPATKPYITFQGAGKDATVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNIS FKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDVGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATKFGSIAAHYRNSPDDKSGFA FLNCRVTGTGPLYVGRAMGKYSRIVYSYTYFDDVVAHGAWDDWNNTITXTATNGSVYLGVYKCWGPGAEALRGVXCAPELEYDLAHPFLAKSFVN | |||
| Full Sequence |
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| Protein Sequence Length: 393 Download |
| MPGPSIFVTT YXPHHHHHHH RIYILRTNDR LKEAAEETRK NVPIVTAARS SHVLVRSSLM 60 TSSPTPATDX SSSKPHHKWV XPSGHRLIMV DVNGSGDFQS VQSAVNAVPV NNTVNIVILI 120 KPGCYIEKVV VPATKPYITF QGAGKDATVI EWHDRASDPG PNGQQLRTYR TASVTVFANY 180 FSARNISFKN TAPAPMPGMQ GWQAVAFRIS GDKAYFSGCG FYGAQDTLCD DVGRHYFKEC 240 YIEGSIDFIF GNGRSMYKDC ELHSIATKFG SIAAHYRNSP DDKSGFAFLN CRVTGTGPLY 300 VGRAMGKYSR IVYSYTYFDD VVAHGAWDDW NNTITXTATN GSVYLGVYKC WGPGAEALRG 360 VXCAPELEYD LAHPFLAKSF VNGRHWIAPD DA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 3.0e-89 | 86 | 389 | 306 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 6.0e-98 | 88 | 392 | 313 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 5.0e-106 | 83 | 387 | 307 | + pectinesterase | ||
| PLN02682 | PLN02682 | 9.0e-119 | 86 | 389 | 305 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 0 | 76 | 392 | 317 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD65006.1 | 0 | 47 | 392 | 2 | 344 | pectinesterase family protein [Brassica oleracea] |
| EMBL | CBI31927.1 | 0 | 60 | 392 | 20 | 349 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199561.1 | 0 | 50 | 392 | 21 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266321.1 | 0 | 63 | 392 | 30 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002303355.1 | 0 | 73 | 389 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 7e-37 | 88 | 387 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 3e-28 | 89 | 387 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-20 | 97 | 294 | 43 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-19 | 98 | 293 | 18 | 227 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-19 | 98 | 293 | 18 | 227 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY273837 | 317 | 76 | 392 | 0 |
| FC912864 | 292 | 76 | 367 | 0 |
| EX098970 | 274 | 120 | 393 | 0 |
| EG517791 | 274 | 120 | 393 | 0 |
| FQ422665 | 257 | 120 | 376 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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