y
Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000482731 |
Family | PL1 |
Protein Properties | Length: 479 Molecular Weight: 53369.8 Isoelectric Point: 10.1669 |
Chromosome | Chromosome/Scaffold: 000030240 Start: 12114 End: 15846 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 119 | 326 | 0 |
AVIQTQPLWIIFARSMVIRLSQELIVTSHKTIDARGANVHIAHGAGITLQFVQNVIIHGLRIHDTVPGSGGMIRDSLSHIGIRTQSDGDGISIYGSSNIW LDHLSMWNCADGLIDAIQGSTAITISNCHFTHHNDVMLFGASDAFAGDAIMQITVAFNHFGKGLIQRMPRCRWGFVHVVNNDYTHWIMYAIGGSSHPTII SQGNRFIA |
Full Sequence |
---|
Protein Sequence Length: 479 Download |
MLVPSLKVET ANVTLNIANF DAVWQTVVEE DLEDDQSAGN STRRNLRGKQ YKGPCKATNP 60 IDRCWRCRAN WANNRKKLAS CVKGFGRKTR GGKKGAYYIV TDSSDDNVHD PKPGTLRHAV 120 IQTQPLWIIF ARSMVIRLSQ ELIVTSHKTI DARGANVHIA HGAGITLQFV QNVIIHGLRI 180 HDTVPGSGGM IRDSLSHIGI RTQSDGDGIS IYGSSNIWLD HLSMWNCADG LIDAIQGSTA 240 ITISNCHFTH HNDVMLFGAS DAFAGDAIMQ ITVAFNHFGK GLIQRMPRCR WGFVHVVNND 300 YTHWIMYAIG GSSHPTIISQ GNRFIAPPNQ AAKEVTKRDY APESVWKSWQ WRSEGDLMMN 360 GAFFVQSGVP NKKHGFGKLD MIKAKPGTFV RRLTRFADPY RVLTVPKPCL DXAQGTSACP 420 ILYYGGFWSV RASRGLIDKF TNRTFVKENG ETIFPVKFRR CNNIIGNGGH RHCRLRFQ* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-22 | 141 | 324 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-56 | 140 | 324 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-67 | 134 | 328 | 208 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 1 | 409 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 1 | 409 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 8 | 397 | 19 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282500.1 | 0 | 40 | 409 | 5 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002520133.1 | 0 | 37 | 409 | 70 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 59 | 397 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 59 | 397 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 128 | 315 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000003 | 142 | 324 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000002 | 207 | 336 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CO103662 | 276 | 96 | 371 | 0 |
HO778688 | 363 | 7 | 368 | 0 |
GO976508 | 254 | 110 | 363 | 0 |
EH715482 | 264 | 100 | 363 | 0 |
GR462190 | 272 | 100 | 370 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|