Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000498407 |
Family | GH28 |
Protein Properties | Length: 561 Molecular Weight: 60983.4 Isoelectric Point: 7.9193 |
Chromosome | Chromosome/Scaffold: 001323262 Start: 730 End: 4318 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 391 | 0 |
WKEACQSIGRVHLIIPKGTYTIGPLRFSGPCGYLKATTDLRKYGSGSGWIEFAWMKGLTLTGGGTFDGRGAHAWPHNKCITNSNCKLLPTNLKFVALNKT VIRGLTSVNSKFFHIALVECHNFKGSRLKISAPETSPNTDGIHIERSSSXYFSSSRIATGDDCISVGQGNSQVTITSITCGPGHGISVGSLGKYPDERDV SGLVVKDCTMTGTTNGIRIKTWANSPGSSAATNMTFENIVMNNVTNPIIIDQSYCPFTACTSKAPSRVKLSDIYFKNIRGTSSSEMAVLLECSKGIPCQN IFLEDVHLDLSSGEKLATS |
Full Sequence |
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Protein Sequence Length: 561 Download |
MGNSSLEFLD VRLLFLLSMF CMASGFGRGV KADGRSLLQH HSKAKSSNLF NVKSFGARAD 60 GRTDDSDAFT AAWKEACQSI GRVHLIIPKG TYTIGPLRFS GPCGYLKATT DLRKYGSGSG 120 WIEFAWMKGL TLTGGGTFDG RGAHAWPHNK CITNSNCKLL PTNLKFVALN KTVIRGLTSV 180 NSKFFHIALV ECHNFKGSRL KISAPETSPN TDGIHIERSS SXYFSSSRIA TGDDCISVGQ 240 GNSQVTITSI TCGPGHGISV GSLGKYPDER DVSGLVVKDC TMTGTTNGIR IKTWANSPGS 300 SAATNMTFEN IVMNNVTNPI IIDQSYCPFT ACTSKAPSRV KLSDIYFKNI RGTSSSEMAV 360 LLECSKGIPC QNIFLEDVHL DLSSGEKLAT SRTPIITRSG NSREKKMESA SEMVAFPLLT 420 TPIESNYRAC TIPYRFPSDN PRKPTPTELS WIDLFYNSTP SFKKRAESDA SVADAPARAE 480 KFAXXYTEIL EDLKKDPESH GGPPDCIDEE NAKAISLFEN VVDLNDAIED EVKRVENLIR 540 GIFAGNIFDL GSAQVRDFLL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-76 | 46 | 385 | 349 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-78 | 51 | 380 | 344 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-82 | 42 | 386 | 359 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-94 | 77 | 390 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 39 | 392 | 361 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 68 | 392 | 1 | 336 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 7 | 391 | 4 | 369 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 49 | 392 | 34 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 7 | 391 | 4 | 401 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 14 | 391 | 8 | 391 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2q40_A | 0 | 408 | 555 | 2 | 172 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 1xfi_A | 0 | 408 | 555 | 2 | 172 | A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 |
PDB | 1bhe_A | 6e-20 | 132 | 380 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-16 | 130 | 386 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-16 | 130 | 386 | 72 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |