Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000502670 |
Family | PL4 |
Protein Properties | Length: 296 Molecular Weight: 33647.9 Isoelectric Point: 5.7108 |
Chromosome | Chromosome/Scaffold: 003914778 Start: 696 End: 3349 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 88 | 271 | 0 |
DKFQFMVVSDDRQRIMPTAEDRENGIKLAYPEAVLLTNPSNPDLRGEVDDKYQYSTENKDNKVHGWICTNPVVGFWIIIPSDEFRTAGPFKHDLTSHVGP TALSAGKEVGMRFVEGEAWKKVFGPVFVYLNSVPTLNETILWENANEQLAEEVNSWPYNFTQSENFPSSSGRGSVAGQLLVQDW |
Full Sequence |
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Protein Sequence Length: 296 Download |
MKYLLCNCRR ALRSATGSDT WYNNMLTKTN NLVVLNNGIV RLTFSHPGGD VIGIQYKGID 60 NLLEIKNHEN NRGYWDVVWN NRETEGVDKF QFMVVSDDRQ RIMPTAEDRE NGIKLAYPEA 120 VLLTNPSNPD LRGEVDDKYQ YSTENKDNKV HGWICTNPVV GFWIIIPSDE FRTAGPFKHD 180 LTSHVGPTAL SAGKEVGMRF VEGEAWKKVF GPVFVYLNSV PTLNETILWE NANEQLAEEV 240 NSWPYNFTQS ENFPSSSGRG SVAGQLLVQD WYFPLLTLVD PRNYKAYVAR RPNIF* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 0.001 | 38 | 80 | 43 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-15 | 88 | 135 | 50 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-17 | 38 | 102 | 69 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 5.0e-36 | 38 | 219 | 191 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC84004.1 | 0 | 33 | 273 | 646 | 898 | hypothetical protein OsI_30207 [Oryza sativa Indica Group] |
RefSeq | NP_001062465.1 | 0 | 29 | 273 | 22 | 318 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002263719.1 | 0 | 88 | 280 | 117 | 317 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319997.1 | 0.000000000002 | 33 | 80 | 1 | 48 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 88 | 273 | 137 | 330 | predicted protein [Populus trichocarpa] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR166104 | 196 | 88 | 272 | 0 |
JG640880 | 214 | 89 | 292 | 0 |
DT571707 | 200 | 88 | 273 | 0 |
BG350988 | 196 | 88 | 273 | 0 |
GW864372 | 196 | 88 | 273 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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