| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000512850 |
| Family | GH28 |
| Protein Properties | Length: 151 Molecular Weight: 16202.3 Isoelectric Point: 6.4964 |
| Chromosome | Chromosome/Scaffold: 001765343 Start: 6614 End: 7495 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 7 | 138 | 4.4e-34 |
| GNEARVENISVHRARFYGTENGARIKTWETAKGLVRGVSFVNLTFKEVGNPITIDQHYFCHKREGCHELSTAVQISDVSYSGAVATSISEVAINLNCSTP VPCTGITLENIQLASADPDMKITSSCHSVHGV | |||
| Full Sequence |
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| Protein Sequence Length: 151 Download |
| MTLENNGNEA RVENISVHRA RFYGTENGAR IKTWETAKGL VRGVSFVNLT FKEVGNPITI 60 DQHYFCHKRE GCHELSTAVQ ISDVSYSGAV ATSISEVAIN LNCSTPVPCT GITLENIQLA 120 SADPDMKITS SCHSVHGVIK GIVEPPVSCL * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-24 | 5 | 136 | 132 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-24 | 2 | 148 | 147 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-24 | 2 | 150 | 152 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-25 | 10 | 146 | 138 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 6.0e-27 | 2 | 150 | 150 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57275.1 | 6e-28 | 2 | 145 | 256 | 398 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
| EMBL | CBI23356.1 | 6e-28 | 2 | 150 | 243 | 390 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI24904.1 | 5e-28 | 2 | 148 | 310 | 456 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274775.1 | 5e-28 | 2 | 148 | 303 | 449 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002329026.1 | 2e-36 | 8 | 150 | 185 | 322 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000002 | 12 | 121 | 262 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES829659 | 150 | 2 | 150 | 1.99965e-42 |
| DR913506 | 159 | 2 | 150 | 2e-36 |
| DT768232 | 159 | 2 | 150 | 2e-36 |
| DT769246 | 159 | 2 | 150 | 3e-36 |
| DT746124 | 159 | 2 | 150 | 4e-36 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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