Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000516623 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 41452.3 Isoelectric Point: 8.7188 |
Chromosome | Chromosome/Scaffold: 010476241 Start: 6088 End: 8279 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 385 | 0 |
WAKACASVNPAVIYVPAGRFLLRNAVFSGPCKNNAITFRIAGTLVAPSDYRVIGNADXWLFFQHVNGVTISGGVLDGKGTGLWGCKSSGQSCPSGATTLG FSNSNNIVVSGLVSLNSQMFHIVINGCHNVKMQGVKVIAAGNSPNTDGIHVQMSSGVTILNSKISTGDDCVSIGPGTTNLWIENVACGPGHGISIGSLGK DQQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSTGFARNILFQHVVMTNVQNPIVXDQHYCPNNKGCPXQVSGVKVSDVTYQDIHGTSATEVAVKFDCSS KYPCNRIRLQDVKLTYKNQAAEASCSHAG |
Full Sequence |
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Protein Sequence Length: 399 Download |
MANPKSLSHP AAVVLALMMV AVSITSVDAA AVTFSVSSLG AKADGRTDST QAFLSAWAKA 60 CASVNPAVIY VPAGRFLLRN AVFSGPCKNN AITFRIAGTL VAPSDYRVIG NADXWLFFQH 120 VNGVTISGGV LDGKGTGLWG CKSSGQSCPS GATTLGFSNS NNIVVSGLVS LNSQMFHIVI 180 NGCHNVKMQG VKVIAAGNSP NTDGIHVQMS SGVTILNSKI STGDDCVSIG PGTTNLWIEN 240 VACGPGHGIS IGSLGKDQQE AGVQNVTVKT VTFTGTQNGV RIKSWGRPST GFARNILFQH 300 VVMTNVQNPI VXDQHYCPNN KGCPXQVSGV KVSDVTYQDI HGTSATEVAV KFDCSSKYPC 360 NRIRLQDVKL TYKNQAAEAS CSHAGGTTAG TVQPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-88 | 61 | 384 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-95 | 30 | 394 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-101 | 34 | 398 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-105 | 29 | 397 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-144 | 29 | 398 | 371 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 398 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 1 | 398 | 1 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 1 | 398 | 1 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 398 | 1 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 398 | 1 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 155 | 371 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-16 | 26 | 378 | 13 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 6e-16 | 9 | 381 | 2 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-16 | 9 | 381 | 2 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 0.000000000000007 | 127 | 352 | 77 | 313 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |