Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000518885 |
Family | PL1 |
Protein Properties | Length: 530 Molecular Weight: 59083.8 Isoelectric Point: 9.8949 |
Chromosome | Chromosome/Scaffold: 012126334 Start: 1504 End: 5261 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 170 | 377 | 0 |
AVIQTQPLWIIFARSMVIRLSQELIVTSHKTIDARGANVHIAHGAGITLQFVQNVIIHGLRIHDTVPGSGGMIRDSLSHIGIRTQSDGDGISIYGSSNIW LDHLSMWNCADGLIDAIQGSTAITISNCHFTHHNDVMLFGASDAFAGDAIMQITVAFNHFGKGLIQRMPRCRWGFVHVVNNDYTHWIMYAIGGSSHPTII SQGNRFIA |
Full Sequence |
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Protein Sequence Length: 530 Download |
MVLGPMASKL NLVLFMISFC MLVPSLKAET ANDTLNIANF DAVWQERAMK AQKAALKAYQ 60 PNPEQVTEDF NESVEQTVVE EDLEDDQSAG NSTRRNLRGK XYKGPCKATN PIDRCWRCRA 120 NWANNRKKLA SCVKGFGRKT RGGKKGAYYI VTDSSDDNVH DPKPGTXRHA VIQTQPLWII 180 FARSMVIRLS QELIVTSHKT IDARGANVHI AHGAGITLQF VQNVIIHGLR IHDTVPGSGG 240 MIRDSLSHIG IRTQSDGDGI SIYGSSNIWL DHLSMWNCAD GLIDAIQGST AITISNCHFT 300 HHNDVMLFGA SDAFAGDAIM QITVAFNHFG KGLIQRMPRC RWGFVHVVNN DYTHWIMYAI 360 GGSSHPTIIS QGNRFIAPPN QAAKEVTKRD YAPESVWKSW QWRSEGDLMM NGAFFVQSGV 420 PNKKHGFGKL DMIKAKPGTF VRRLTRFADP YRVLTVPKPC LDXAQGTSAC PILYYGGFWS 480 VRASRGLIDK FTNRTFVKEN GETIFPVKFR RCNNIIGNGG HRHCRLRFQ* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam04431 | Pec_lyase_N | 3.0e-14 | 36 | 97 | 62 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. |
COG3866 | PelB | 7.0e-23 | 192 | 375 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 2.0e-57 | 191 | 375 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 2.0e-68 | 185 | 379 | 208 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 21 | 460 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 21 | 460 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 20 | 448 | 18 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330086.1 | 0 | 7 | 460 | 3 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 460 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 110 | 448 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 110 | 448 | 2 | 342 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-17 | 179 | 366 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000004 | 193 | 375 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000002 | 258 | 387 | 205 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |