Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000524522 |
Family | GH28 |
Protein Properties | Length: 540 Molecular Weight: 59547.5 Isoelectric Point: 7.2079 |
Chromosome | Chromosome/Scaffold: 011435443 Start: 4217 End: 8669 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 161 | 487 | 0 |
RDACSSPWPAKVVIPEGEYYLRGAILHGPCKSPIEVQVQGYLRAPQESSQLLQQNTWVGFQYVDRLTLFGGGTFDGQSNCHKYKSCQSNRVFNLRFDFVT NSVIEGITSLDSKNFHINVFACRNVTFQYVTITAPEDSVNTDGIHIGRSFGVTIDHTIIGTGDDCISLGDGSQNIVVTXVTCGPGHGISIGSLGKYPDEE PVVGVRVKNCTLTNTQNGVRIKTWPGSPTFTTASHIHFQXIXMVNVSNPISIDQEYCPYTYCGKDDPSKVKISDISFTNIKGSSATPVAVKLMCSRKIPC DGVGLTDVDLTYIGSKGPLTSQCAYVK |
Full Sequence |
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Protein Sequence Length: 540 Download |
MQQAPFAKGS SLKSXWLHPC YVSDDGVAML TFESLAETFE FARKWVPFCK KYFSIKSCAP 60 EFYFSQKIDY LKDKVQQSFV KERRAMKNST VHPKLQRIVD NSSDSMQSSS ISHSQATSSS 120 CRSNLMASIA NAKAEVFYVT NSTYGGNPSG DITLALADAW RDACSSPWPA KVVIPEGEYY 180 LRGAILHGPC KSPIEVQVQG YLRAPQESSQ LLQQNTWVGF QYVDRLTLFG GGTFDGQSNC 240 HKYKSCQSNR VFNLRFDFVT NSVIEGITSL DSKNFHINVF ACRNVTFQYV TITAPEDSVN 300 TDGIHIGRSF GVTIDHTIIG TGDDCISLGD GSQNIVVTXV TCGPGHGISI GSLGKYPDEE 360 PVVGVRVKNC TLTNTQNGVR IKTWPGSPTF TTASHIHFQX IXMVNVSNPI SIDQEYCPYT 420 YCGKDDPSKV KISDISFTNI KGSSATPVAV KLMCSRKIPC DGVGLTDVDL TYIGSKGPLT 480 SQCAYVKPYI TRLTEPLIQG PDLLSEVDIL CCYQESFAIN LRQTYIPPEM PKENIQHRE* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-75 | 139 | 470 | 344 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-81 | 129 | 483 | 362 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-81 | 136 | 470 | 345 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-115 | 164 | 487 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-121 | 121 | 487 | 381 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0016020 | membrane |
GO:0016760 | cellulose synthase (UDP-forming) activity |
GO:0030244 | cellulose biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR26683.1 | 0 | 137 | 497 | 34 | 399 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 127 | 493 | 20 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 127 | 493 | 20 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 151 | 493 | 41 | 387 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 132 | 493 | 23 | 387 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.000000000000003 | 300 | 485 | 165 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1czf_B | 0.00000000000005 | 267 | 454 | 139 | 329 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000005 | 267 | 454 | 139 | 329 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000000004 | 262 | 455 | 111 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000004 | 262 | 455 | 111 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC885548 | 282 | 144 | 418 | 0 |
EC987202 | 280 | 138 | 409 | 0 |
CU617067 | 300 | 125 | 415 | 0 |
CX191860 | 290 | 191 | 472 | 0 |
DY292761 | 282 | 144 | 418 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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