Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000524876 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41027 Isoelectric Point: 7.0693 |
Chromosome | Chromosome/Scaffold: 01692662 Start: 4127 End: 6091 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 382 | 0 |
AWSNACASVNPAVIYVPAGRFLLXNAVFSGPCKNNAITFRIAGTLVAPSDYQVIGNAGNWLLFQHVNGVTISGGVLDGQGTGLWDCKSSGKSCPSGATTL GFSNSNNIVVSGLVSLNSQMFHIVVNGCQNVQMQGVKVNAAGNSPNTDGIHVQMSSGVTILNSKISTGDDCVSVGPGTTNLWIENVACGPGHGISIGSLG KDQQEAGVQNVTVKTXTFTGTENGVRIKSWGRPSTGFARSILFQHIVMTNVQNPIVIDQNYCPNDKGCPGQASGVKVSDVTYXDIHGTSATEVAVKFDCS SMYPCNGIXLQDVKLTYNNQAAEASCIHA |
Full Sequence |
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Protein Sequence Length: 397 Download |
MANPRSLTYP AAAVFALLMI SITNVDAAAV TFSVSSLGAK XDGTTDSTKA FLSAWSNACA 60 SVNPAVIYVP AGRFLLXNAV FSGPCKNNAI TFRIAGTLVA PSDYQVIGNA GNWLLFQHVN 120 GVTISGGVLD GQGTGLWDCK SSGKSCPSGA TTLGFSNSNN IVVSGLVSLN SQMFHIVVNG 180 CQNVQMQGVK VNAAGNSPNT DGIHVQMSSG VTILNSKIST GDDCVSVGPG TTNLWIENVA 240 CGPGHGISIG SLGKDQQEAG VQNVTVKTXT FTGTENGVRI KSWGRPSTGF ARSILFQHIV 300 MTNVQNPIVI DQNYCPNDKG CPGQASGVKV SDVTYXDIHG TSATEVAVKF DCSSMYPCNG 360 IXLQDVKLTY NNQAAEASCI HAGGTTAGTV QPTSCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-90 | 59 | 379 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-95 | 28 | 392 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-101 | 32 | 396 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-105 | 27 | 395 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-144 | 11 | 396 | 390 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 396 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAC22689.1 | 0 | 1 | 396 | 1 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 396 | 1 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 396 | 1 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 67 | 369 | 57 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 7e-19 | 28 | 369 | 14 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 7e-19 | 28 | 369 | 14 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 2e-16 | 58 | 383 | 17 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 58 | 383 | 17 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |