y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000558179 |
Family | GH28 |
Protein Properties | Length: 374 Molecular Weight: 40291.2 Isoelectric Point: 5.6442 |
Chromosome | Chromosome/Scaffold: 011011163 Start: 320 End: 3407 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 105 | 277 | 2.79979e-42 |
AAACKVQASTISVPSGSVFLVKPISFSGPNCEENIVFQLDGKIIAPTSSGDWGSGLLQWIEFTKLKGISIKGTGVIDGQGSVWWNDSPKYNPANESTDSS LDXLALRFYGSDLVSVTGITLQNSPQAHLKFDACTNVQVSGISISSPGNSPNTDGIHLQNSQNAVISASSIAC |
Full Sequence |
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Protein Sequence Length: 374 Download |
MRTFNLKTLL FFVLIAFIIS FSSFFEPCDA REGGNKQHWR KKQKGYGGDH RRXASRGDSY 60 ITXDETAVTL GKKSGGGSNV FNVLDYGAKG DGKADDTKAF EAAWAAACKV QASTISVPSG 120 SVFLVKPISF SGPNCEENIV FQLDGKIIAP TSSGDWGSGL LQWIEFTKLK GISIKGTGVI 180 DGQGSVWWND SPKYNPANES TDSSLDXLAL RFYGSDLVSV TGITLQNSPQ AHLKFDACTN 240 VQVSGISISS PGNSPNTDGI HLQNSQNAVI SASSIACEVE TPIMIDQFYC DKSKCQNQSS 300 AVAISGVNYV NIQGTYTSKA VHFACSDSSP CTGVSLDTIE LKSVDEGKHL ELPAMNEPYK 360 TERNEQEQQH NNF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-11 | 257 | 341 | 92 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-15 | 279 | 343 | 67 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-20 | 112 | 275 | 166 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-21 | 113 | 275 | 164 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-23 | 112 | 276 | 165 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 277 | 1 | 248 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 277 | 1 | 248 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 1 | 277 | 2 | 313 | polygalacturonase 1 [Prunus persica] |
DDBJ | BAH56488.1 | 1e-34 | 266 | 359 | 384 | 476 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002521450.1 | 0 | 22 | 346 | 22 | 429 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.00000004 | 82 | 271 | 29 | 252 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.00000004 | 82 | 271 | 29 | 252 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.00000004 | 82 | 271 | 29 | 252 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.00000004 | 82 | 271 | 29 | 252 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1rmg_A | 0.0000002 | 76 | 293 | 16 | 219 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |