Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000582836 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42312.2 Isoelectric Point: 8.4426 |
Chromosome | Chromosome/Scaffold: 010123207 Start: 6222 End: 7664 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 385 | 0 |
WKEACTSATPSTVVIAKGNYMVGPVKFQGPCKAPVSLRVEGTLQAPAEPEKLKSQDGWVIFQNIDALSVSGGGTFDGQGSIAWSKNDCAKTGKCNSLPIS LRLTGLTNAHIQDITSTNSKLFHMNILNCKNVTLQHVTIKAPGESLNTDGIHIGRSTNINITGAEIQTGDDCVSIGDGSQQINIEKVTCGPGHGISIGSL GRYHDEQPVRGVTVRNCTIKNTSNGVRVKTWPASPNGVASDLHFEDIIMENVTTSPVLIDQEYCPNGQCQAKMPSRVKISNVSFKNIRGTSADPVAVKLA CSKGIPCQNVEISDINLTCNGKNGTCTSVCSNVNPT |
Full Sequence |
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Protein Sequence Length: 401 Download |
MGSKFVLRAT FFLFLVALFI KAKAADIDIK KFGAKADGKT DDSQAINSAW KEACTSATPS 60 TVVIAKGNYM VGPVKFQGPC KAPVSLRVEG TLQAPAEPEK LKSQDGWVIF QNIDALSVSG 120 GGTFDGQGSI AWSKNDCAKT GKCNSLPISL RLTGLTNAHI QDITSTNSKL FHMNILNCKN 180 VTLQHVTIKA PGESLNTDGI HIGRSTNINI TGAEIQTGDD CVSIGDGSQQ INIEKVTCGP 240 GHGISIGSLG RYHDEQPVRG VTVRNCTIKN TSNGVRVKTW PASPNGVASD LHFEDIIMEN 300 VTTSPVLIDQ EYCPNGQCQA KMPSRVKISN VSFKNIRGTS ADPVAVKLAC SKGIPCQNVE 360 ISDINLTCNG KNGTCTSVCS NVNPTVTGKV IPPACSAKTS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-82 | 38 | 392 | 360 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-83 | 38 | 395 | 359 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-88 | 38 | 395 | 364 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-113 | 54 | 382 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-131 | 38 | 395 | 359 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 21 | 396 | 65 | 438 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA11160.1 | 0 | 21 | 396 | 65 | 438 | polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 24 | 396 | 67 | 437 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 21 | 396 | 65 | 438 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_188020.1 | 0 | 21 | 396 | 65 | 438 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-22 | 116 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-22 | 116 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-22 | 116 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-22 | 116 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-22 | 116 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |