| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000590596 |
| Family | GH28 |
| Protein Properties | Length: 164 Molecular Weight: 17495 Isoelectric Point: 7.0125 |
| Chromosome | Chromosome/Scaffold: 0126031268 Start: 60 End: 815 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 11 | 152 | 5.49309e-43 |
| LSVGSLGKYPDERDVSGLVVKDCTMTGTTNGIRIKTWANSPGSSAATNMTFENIVMNNVTNPIIIDQSYCPFTACTSKAPSRVKLSDIYFKNIRGTSSSE MAVLLECSKGIPCQNIFLEDVHLDLSSGEKLATSSCSNVKAK | |||
| Full Sequence |
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| Protein Sequence Length: 164 Download |
| MTASQLDKET LSVGSLGKYP DERDVSGLVV KDCTMTGTTN GIRIKTWANS PGSSAATNMT 60 FENIVMNNVT NPIIIDQSYC PFTACTSKAP SRVKLSDIYF KNIRGTSSSE MAVLLECSKG 120 IPCQNIFLED VHLDLSSGEK LATSSCSNVK AKFIGTQIPP PCT* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-30 | 11 | 159 | 149 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-30 | 11 | 162 | 152 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-35 | 11 | 162 | 152 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-44 | 11 | 150 | 140 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-97 | 11 | 163 | 153 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 11 | 162 | 248 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| EMBL | CAA16789.1 | 0 | 11 | 162 | 199 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193552.1 | 0 | 11 | 162 | 251 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 11 | 162 | 268 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 11 | 162 | 258 | 409 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000007 | 25 | 133 | 262 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000003 | 11 | 149 | 204 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000003 | 11 | 149 | 204 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000003 | 11 | 149 | 204 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00007 | 11 | 149 | 199 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR944704 | 152 | 11 | 162 | 0 |
| DR938457 | 152 | 11 | 162 | 0 |
| DT736436 | 152 | 11 | 162 | 0 |
| DT761079 | 152 | 11 | 162 | 0 |
| DR933566 | 123 | 11 | 133 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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