| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000600336 |
| Family | GH28 |
| Protein Properties | Length: 390 Molecular Weight: 43444.1 Isoelectric Point: 4.8545 |
| Chromosome | Chromosome/Scaffold: 0015772961 Start: 4978 End: 9884 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 153 | 289 | 2e-32 |
| PSGSGQILGNIEAPSNLSDWNECQSGCWLCFSNVSNLAVVGTGEINGHGYLWWXNKAAQAIDNTKVSNAIHFDQCDNLQLGGFASIDSPRNHIRMHRCND VYISNIHITAPEDSPNTDGIAISSTSHVKVLDSVIET | |||
| Full Sequence |
|---|
| Protein Sequence Length: 390 Download |
| MREKGEKTDR LSMFIKTRTK KTKNDDRDLF DEESGHIINQ FNQCLEEREE HEQDEDYREE 60 VFTRVMGPDA YGRVRMYGTG ITPSQVFCQS SRSSNVNEDT IREEVERQYK TKIDDLKAKH 120 ESEIEDLRSK YSEVSSKLHL VMTHIGFHVN TSPSGSGQIL GNIEAPSNLS DWNECQSGCW 180 LCFSNVSNLA VVGTGEINGH GYLWWXNKAA QAIDNTKVSN AIHFDQCDNL QLGGFASIDS 240 PRNHIRMHRC NDVYISNIHI TAPEDSPNTD GIAISSTSHV KVLDSVIETE TQNAPVNGMH 300 MEAKSRDPFA VDGAPILASM SNVSNDLPLV LEPAKAEYGT XQSSRAKGND TLQAPSLVEX 360 RLSXTSNLYD LPQFTSFQEP AALYGALQA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-20 | 158 | 297 | 153 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-23 | 158 | 289 | 134 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-26 | 151 | 289 | 142 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-26 | 158 | 289 | 132 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-31 | 158 | 289 | 132 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA20037.1 | 1e-25 | 158 | 297 | 77 | 202 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 4e-26 | 158 | 297 | 87 | 222 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 1e-25 | 158 | 298 | 52 | 187 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 1e-30 | 158 | 298 | 92 | 227 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 9e-30 | 158 | 298 | 90 | 224 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| GE483973 | 135 | 158 | 289 | 7e-29 |
| DY964976 | 144 | 158 | 298 | 8e-27 |
| DY961682 | 144 | 158 | 298 | 1e-26 |
| CV538127 | 144 | 158 | 297 | 3e-25 |
| EL457180 | 142 | 158 | 297 | 6e-25 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |