Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000600662 |
Family | PL4 |
Protein Properties | Length: 685 Molecular Weight: 78245 Isoelectric Point: 4.9988 |
Chromosome | Chromosome/Scaffold: 016842249 Start: 16897 End: 18951 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 62 | 664 | 0 |
LTEQTQNTVELNNGIVRVTFSNPGGDVIGIQYKGIDNLLDIKNPPSNRGYWDLVWKNGEDRLQGTTFKIVTSTADQIEISFNKTYDVSLGDWTLPLNVDK RYIMQRGRAGFYAXAIYERLEGWPELRIDQTRLALKLRQDKFQFMAISDDRQRFMPTAEDRXGDHSQTLAYREAVLLTNPSNPEFKGEVDDKYQYSNDVK DIKVHGWISTDDAIGLWMITPSIEFRSAGPFKQELTSHVGPTALTVFLSSHYVGKDVGLTFADGEAWKKVFGPVFVFLNSDVPSSNASFSLWENAKEQMY EEVKSWPYNFTQSEDFPNSDERGSVAGQLLIRDSYINESLVSASYAYVGLAASGYAGSWQTECKGYQFWTQADKQGYFYVKDVRPGNYSLYATVPGFIGD YKYEYDITIEAASEVSLANLTFEPPRNGPTLWEIGTPDRSAAEFNIPDPYPTLVNRLFTGNYANRFRQYGLWERYGDYYPDRDLIYTVGTDNYRDDWFYA HVTRNRNGTYEATTWQIVFQLENVWNTGNYMLQLALASANYAELQVRFNNRNDAPHFSTGLIGKDNAIARHGIHGLYWLFSVDVPSYRLQQGYNTIYLTQ SRN |
Full Sequence |
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Protein Sequence Length: 685 Download |
MLSMEKVTQM RRWVILGVLA LALLGLLFFF PINNGAYETT RISGRRALRS VTGNELNFNQ 60 MLTEQTQNTV ELNNGIVRVT FSNPGGDVIG IQYKGIDNLL DIKNPPSNRG YWDLVWKNGE 120 DRLQGTTFKI VTSTADQIEI SFNKTYDVSL GDWTLPLNVD KRYIMQRGRA GFYAXAIYER 180 LEGWPELRID QTRLALKLRQ DKFQFMAISD DRQRFMPTAE DRXGDHSQTL AYREAVLLTN 240 PSNPEFKGEV DDKYQYSNDV KDIKVHGWIS TDDAIGLWMI TPSIEFRSAG PFKQELTSHV 300 GPTALTVFLS SHYVGKDVGL TFADGEAWKK VFGPVFVFLN SDVPSSNASF SLWENAKEQM 360 YEEVKSWPYN FTQSEDFPNS DERGSVAGQL LIRDSYINES LVSASYAYVG LAASGYAGSW 420 QTECKGYQFW TQADKQGYFY VKDVRPGNYS LYATVPGFIG DYKYEYDITI EAASEVSLAN 480 LTFEPPRNGP TLWEIGTPDR SAAEFNIPDP YPTLVNRLFT GNYANRFRQY GLWERYGDYY 540 PDRDLIYTVG TDNYRDDWFY AHVTRNRNGT YEATTWQIVF QLENVWNTGN YMLQLALASA 600 NYAELQVRFN NRNDAPHFST GLIGKDNAIA RHGIHGLYWL FSVDVPSYRL QQGYNTIYLT 660 QSRNWGPFAG LMYDYIRLEG PPPN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam09284 | RhgB_N | 0.007 | 248 | 348 | 105 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. |
cd10316 | RGL4_M | 3.0e-27 | 382 | 481 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 3.0e-46 | 493 | 679 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 3.0e-60 | 72 | 342 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 2.0e-76 | 68 | 250 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002308510.1 | 0 | 26 | 681 | 19 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 72 | 682 | 3 | 618 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 65 | 681 | 49 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 70 | 681 | 2 | 618 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 68 | 682 | 13 | 634 | lyase, putative [Ricinus communis] |