Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000610678 |
Family | GH28 |
Protein Properties | Length: 485 Molecular Weight: 52813.8 Isoelectric Point: 5.3025 |
Chromosome | Chromosome/Scaffold: 009713269 Start: 4979 End: 7997 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 435 | 0 |
KSEGGSQLVVPPGKWLTGSFNLTSHFTLYLHKDAVLLASQDESEWPVIEPLPSYGRGRDNTDGGRFISLIFGTNLTDVVITGDNGTIDGQGEVWWQKFKK GQLNYTRPYLIEIMYSENIQISNLTLVNSPSWNVHPIYSSNVLVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIAFGMPT KQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIFAIDSESGVRIKTAVGRGGFVKDIYVRGMTMKTMKWAFWMTGNYGSHADNGYDPNALPAIQNIN YHDMVAENVTMAAKLEGIPGDPFTGICISNVTITLAKKAKKLPWNCTDIA |
Full Sequence |
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Protein Sequence Length: 485 Download |
MRRTPMNTQS SEMVMAVVFV VLLATTKGVE SRKARRENAG GEYFEYCAIS CRAKSASLTD 60 YGGVGDGTTS NTKAFQEAIT HLSQYKSEGG SQLVVPPGKW LTGSFNLTSH FTLYLHKDAV 120 LLASQDESEW PVIEPLPSYG RGRDNTDGGR FISLIFGTNL TDVVITGDNG TIDGQGEVWW 180 QKFKKGQLNY TRPYLIEIMY SENIQISNLT LVNSPSWNVH PIYSSNVLVQ GITILAPVTS 240 PNTDGINPDS CTNTRIEDCY IVSGDDCIAV KSGWDEYGIA FGMPTKQLVI RRLTCISPFS 300 AVIALGSEMS GGIQDVRAED IFAIDSESGV RIKTAVGRGG FVKDIYVRGM TMKTMKWAFW 360 MTGNYGSHAD NGYDPNALPA IQNINYHDMV AENVTMAAKL EGIPGDPFTG ICISNVTITL 420 AKKAKKLPWN CTDIAGISSG VVPRPCEALA DQGPGNVTAC NFPEEGLPID NVQVQVCSYR 480 REHW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-22 | 60 | 353 | 309 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-25 | 53 | 374 | 334 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-26 | 55 | 446 | 405 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-33 | 91 | 434 | 355 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-56 | 56 | 353 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 30 | 479 | 41 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002278930.1 | 0 | 26 | 479 | 27 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 14 | 484 | 15 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 20 | 478 | 12 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 26 | 483 | 27 | 479 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 54 | 422 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 54 | 422 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 54 | 422 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 54 | 422 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000005 | 72 | 355 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |