Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000615684 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 42973.9 Isoelectric Point: 9.6075 |
Chromosome | Chromosome/Scaffold: 010476235 Start: 1603 End: 3160 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 392 | 0 |
SACSSGQRNAVMYIPKGRFLLKAVVFRGPCKTGQVTVQIDGTLVAPTDYRALGNSGYWILFIKVTGLRVLGGSLDARGAAFWACRKSGKSCPLGARSITF NWANSVLVXGLTSINSQATHLVVNSCNNVVVRNVKXIAPSESPNTDGIHVQSSTGVTITGSILQTGDDCIAIGPGTRNLHMSNIKCGPGHGVSIGSLGRN LKEDGVQNVTLTNAVFSGSDNGVRIKSWARPSTGFVRNIIFQNIXMRNVKNPIIIDQXYCPHNQGCPSXXSGVTISQVXYRNIQGTSXTAEAVTFDCSPS TPCTGIRLQDIKLTYLNKVATSSCKNIRG |
Full Sequence |
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Protein Sequence Length: 405 Download |
MAYTSSFCGN IHNYCVAAVL LFFSSMSLSQ SSNAAAVSYN VMKFGARADG TTDSTQAFVK 60 AWASACSSGQ RNAVMYIPKG RFLLKAVVFR GPCKTGQVTV QIDGTLVAPT DYRALGNSGY 120 WILFIKVTGL RVLGGSLDAR GAAFWACRKS GKSCPLGARS ITFNWANSVL VXGLTSINSQ 180 ATHLVVNSCN NVVVRNVKXI APSESPNTDG IHVQSSTGVT ITGSILQTGD DCIAIGPGTR 240 NLHMSNIKCG PGHGVSIGSL GRNLKEDGVQ NVTLTNAVFS GSDNGVRIKS WARPSTGFVR 300 NIIFQNIXMR NVKNPIIIDQ XYCPHNQGCP SXXSGVTISQ VXYRNIQGTS XTAEAVTFDC 360 SPSTPCTGIR LQDIKLTYLN KVATSSCKNI RGTSTGLLMP DXCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-84 | 39 | 395 | 362 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-86 | 40 | 400 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-92 | 41 | 403 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-99 | 39 | 403 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-153 | 39 | 404 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 19 | 404 | 10 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 14 | 404 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 14 | 404 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 12 | 404 | 3 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 18 | 404 | 6 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-20 | 134 | 390 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-20 | 134 | 390 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-20 | 134 | 390 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-20 | 134 | 390 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-20 | 134 | 390 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |