Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000661406 |
Family | PL4 |
Protein Properties | Length: 371 Molecular Weight: 42033.7 Isoelectric Point: 9.8192 |
Chromosome | Chromosome/Scaffold: 0362636 Start: 451 End: 4052 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 15 | 266 | 0 |
RDRANGKPLAYPEAVLLTKTSNPDLRGEVDDKYQYSTEDKDNKVHGWICNEPPVGFWIITSSDEFRTAGPFKQDLTSHAGPTVLSMFASTHYGGKEVGMT FKDGEAWXKVFGPVFVYLNSVRSSNNSLRLWENAKEQMLEEVKRWPYNFTQSEDFPSSDKRGSVAGQLLIQDQYINESLVWASSXYVGLAAPGNVGSWQK ESKGYQFWTQTNKQGYFLIKDVRPGNYSLYATVPGVVGDYKYETIIKIKPST |
Full Sequence |
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Protein Sequence Length: 371 Download |
MAISDNRKRV MPTARDRANG KPLAYPEAVL LTKTSNPDLR GEVDDKYQYS TEDKDNKVHG 60 WICNEPPVGF WIITSSDEFR TAGPFKQDLT SHAGPTVLSM FASTHYGGKE VGMTFKDGEA 120 WXKVFGPVFV YLNSVRSSNN SLRLWENAKE QMLEEVKRWP YNFTQSEDFP SSDKRGSVAG 180 QLLIQDQYIN ESLVWASSXY VGLAAPGNVG SWQKESKGYQ FWTQTNKQGY FLIKDVRPGN 240 YSLYATVPGV VGDYKYETII KIKPSTLNLI RHCRNTGNNT YEATTWRILF QLKNLTTTGN 300 YTLQLALASA NNAEVQATHX XGKEGRHRAX KKEGRAEKKK RNXQSCREQH SRKIREPQLH 360 MEGGSESIRR * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.003 | 223 | 249 | 27 | + Carboxypeptidase regulatory-like domain. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-12 | 1 | 43 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 3.0e-26 | 174 | 265 | 92 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-38 | 1 | 131 | 131 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002308510.1 | 0 | 1 | 266 | 198 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002308510.1 | 0.000005 | 273 | 317 | 552 | 596 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 264 | 142 | 405 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 1 | 266 | 143 | 409 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0.000004 | 274 | 315 | 500 | 541 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG640880 | 268 | 1 | 266 | 0 |
EL398250 | 247 | 1 | 247 | 0 |
GW864372 | 268 | 1 | 266 | 0 |
GR150158 | 252 | 1 | 249 | 0 |
EL450442 | 235 | 1 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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