Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000665344 |
Family | GH28 |
Protein Properties | Length: 211 Molecular Weight: 22300.8 Isoelectric Point: 4.7421 |
Chromosome | Chromosome/Scaffold: 0166699 Start: 3828 End: 4460 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 173 | 1.7e-29 |
YDAIALKSGWDEYGIAYGRPTTNVHIRHVTLQSATGSSLALGSEMSGGISNVHVEQVRLHNSISGIQFRTTKGRGGYIKDIIISDVEVENIYMAFGASGQ FGSHPDDKYDPNALPVLDHITLQDVVGTNITIAGCFTGIEESPFTSFCLSNISLSLNSASPTTWDCSYVSG |
Full Sequence |
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Protein Sequence Length: 211 Download |
MGYDAIALKS GWDEYGIAYG RPTTNVHIRH VTLQSATGSS LALGSEMSGG ISNVHVEQVR 60 LHNSISGIQF RTTKGRGGYI KDIIISDVEV ENIYMAFGAS GQFGSHPDDK YDPNALPVLD 120 HITLQDVVGT NITIAGCFTG IEESPFTSFC LSNISLSLNS ASPTTWDCSY VSGSSESVFP 180 EPCSDLNTSY SNPSSAHISL LTGNGKAVVL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 0.009 | 2 | 93 | 94 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 4.0e-13 | 2 | 137 | 142 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 1 | 183 | 245 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 1 | 183 | 247 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 1 | 192 | 245 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 207 | 247 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 210 | 245 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000001 | 2 | 153 | 259 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000001 | 2 | 153 | 259 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000001 | 2 | 153 | 259 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000001 | 2 | 153 | 259 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV628769 | 165 | 47 | 211 | 0 |
CU494711 | 189 | 1 | 189 | 0 |
CO069530 | 206 | 1 | 206 | 0 |
EY868990 | 186 | 1 | 186 | 0 |
BU873813 | 207 | 1 | 207 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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