Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000701129 |
Family | PL1 |
Protein Properties | Length: 300 Molecular Weight: 33285.5 Isoelectric Point: 8.7496 |
Chromosome | Chromosome/Scaffold: 006102369 Start: 338 End: 1413 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 13 | 219 | 0 |
VIQTGPLWIIFARDMRIKLREELMVTSDKTIDARGANVHIEDGAQITLQFVXNVIIHNLHIHDTKPGNGGMIRDSVNHYGQRTRSDGDGISMYGASNVWI DHVSGSNCADGLVDAIQGSTAITISNCHFTNHNDVMLFGSSDSNSQDEVMQITLAFNHFGQGLIQRMPRCRWGFFHVVNNDYTHWIMYAIGGSQHPTIIS QGNRFIA |
Full Sequence |
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Protein Sequence Length: 300 Download |
MVNPKPGTLR HAVIQTGPLW IIFARDMRIK LREELMVTSD KTIDARGANV HIEDGAQITL 60 QFVXNVIIHN LHIHDTKPGN GGMIRDSVNH YGQRTRSDGD GISMYGASNV WIDHVSGSNC 120 ADGLVDAIQG STAITISNCH FTNHNDVMLF GSSDSNSQDE VMQITLAFNH FGQGLIQRMP 180 RCRWGFFHVV NNDYTHWIMY AIGGSQHPTI ISQGNRFIAP SNNASKEVTK RTSGAENEWK 240 SWNWRSENDL MMNGAFFVES GSPIRNLPKA DMIKAKPGTF VTRLTRFAGP LKCIKGKPC* 300 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 8.0e-31 | 34 | 234 | 213 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 3.0e-66 | 33 | 217 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 3.0e-76 | 26 | 221 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN77957.1 | 0 | 1 | 299 | 109 | 407 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272638.1 | 0 | 1 | 299 | 53 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 1 | 299 | 128 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 299 | 137 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 299 | 141 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 2 | 289 | 51 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 2 | 289 | 51 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-19 | 9 | 208 | 38 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000006 | 30 | 217 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1bn8_A | 0.00000000000005 | 30 | 234 | 139 | 363 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO513651 | 198 | 103 | 300 | 0 |
JG078960 | 259 | 33 | 289 | 0 |
CO103662 | 263 | 1 | 263 | 0 |
ES827871 | 300 | 2 | 300 | 0 |
DT556743 | 300 | 2 | 300 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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