Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000718765 |
Family | PL1 |
Protein Properties | Length: 419 Molecular Weight: 45676.5 Isoelectric Point: 7.2411 |
Chromosome | Chromosome/Scaffold: 002085501 Start: 70 End: 1976 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 131 | 337 | 0 |
VIQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGLHIHDCKQGGNAMVRSSPRHFGWRTVSDGDGVSIFGGSHVWV DHCSLSNCKDGLVDAIYGSTAITISNNYMTHHDKVMLLGHSDSYTNDKNMQITIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINS QGNRFAA |
Full Sequence |
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Protein Sequence Length: 419 Download |
MPKMPRPSSG PSLLSPLLLL PLLSLLSPTL ISSRPLHLQD PELVVQEVQR NISDSVSRRN 60 LGYLSCGTGN PIDDCWRCDP NWEKNRQSLA DCAIGFGKNA IGGRDGKIYV VTDSGDDDPV 120 NPKPGTLRHA VIQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI AGGPCITIQF 180 VTNIIIHGLH IHDCKQGGNA MVRSSPRHFG WRTVSDGDGV SIFGGSHVWV DHCSLSNCKD 240 GLVDAIYGST AITISNNYMT HHDKVMLLGH SDSYTNDKNM QITIAFNHFG EGLVQRMPRC 300 RHGYFHVVNN DYTHWEMYAI GGSADPTINS QGNRFAAPDI RSSKEVTKHE DAPESEWKNW 360 NWRSEGDLML NGAFFTASGA GASSSYARAS SLGAKPSSLV GAITTASGAL SCRKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 7.0e-27 | 157 | 335 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 6.0e-72 | 150 | 335 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 6.0e-80 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 1 | 418 | 1 | 418 | pectate lyase [Malus x domestica] |
GenBank | ABV32549.1 | 0 | 27 | 418 | 23 | 413 | pectase lyase [Prunus persica] |
DDBJ | BAE48664.1 | 0 | 4 | 418 | 1 | 413 | Pectate lyase [Prunus mume] |
DDBJ | BAF43572.1 | 0 | 27 | 418 | 23 | 413 | pectate lyase [Prunus persica] |
RefSeq | XP_002322215.1 | 0 | 27 | 418 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 379 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 379 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 88 | 335 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 5e-16 | 142 | 411 | 135 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000001 | 142 | 411 | 135 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |