Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000766241 |
Family | GH28 |
Protein Properties | Length: 359 Molecular Weight: 39356.9 Isoelectric Point: 5.1919 |
Chromosome | Chromosome/Scaffold: 020435560 Start: 23774 End: 25362 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 8 | 307 | 0 |
FKPTQEKCAKDNTDGARFISLIFGTNLTDVVITGDNGTIDGQGEVWWQKFKKGQLNYTRPYLIEIMYSENIQISNLTLVNSPSWNVHPIYSCNVLVQSIT ILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDEYGIAFRMPTKQLVIRRLTCISPCSAVIALGSEMSGGIQDERTADIVAINLESGVRIK TAVGRGGFVEDIYVRGMTMKTMKWAFWMTGNYGSHADNGYNPNALPVIQNINYHDMVAENVTMAAELEGIPGDPFTGICISNVTITLAKNVKKLPWNCTD |
Full Sequence |
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Protein Sequence Length: 359 Download |
MVRKSFSFKP TQEKCAKDNT DGARFISLIF GTNLTDVVIT GDNGTIDGQG EVWWQKFKKG 60 QLNYTRPYLI EIMYSENIQI SNLTLVNSPS WNVHPIYSCN VLVQSITILA PVTSPNTDGI 120 NPDSCTNTRI EDCYIVSGDD CIAVKSGWDE YGIAFRMPTK QLVIRRLTCI SPCSAVIALG 180 SEMSGGIQDE RTADIVAINL ESGVRIKTAV GRGGFVEDIY VRGMTMKTMK WAFWMTGNYG 240 SHADNGYNPN ALPVIQNINY HDMVAENVTM AAELEGIPGD PFTGICISNV TITLAKNVKK 300 LPWNCTDGAG ISSRVVPQPC EALADQGPGS VAACNFPEES LPIDNVQVQV CFYRRKHW* 360 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02793 | PLN02793 | 2.0e-15 | 44 | 227 | 192 | + Probable polygalacturonase |
PLN02218 | PLN02218 | 6.0e-19 | 41 | 292 | 258 | + polygalacturonase ADPG |
PLN03003 | PLN03003 | 1.0e-21 | 29 | 230 | 211 | + Probable polygalacturonase At3g15720 |
pfam00295 | Glyco_hydro_28 | 3.0e-28 | 4 | 307 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 2.0e-36 | 27 | 227 | 209 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 8 | 353 | 140 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002278930.1 | 0 | 19 | 357 | 141 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 19 | 358 | 141 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 19 | 351 | 132 | 464 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002337059.1 | 0 | 19 | 351 | 18 | 350 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6e-33 | 28 | 296 | 116 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6e-33 | 28 | 296 | 116 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6e-33 | 28 | 296 | 116 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6e-33 | 28 | 296 | 116 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.0000000000002 | 2 | 229 | 76 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES810566 | 336 | 22 | 357 | 0 |
CF512873 | 312 | 47 | 358 | 0 |
GW909430 | 278 | 19 | 296 | 0 |
ES810198 | 314 | 43 | 356 | 0 |
CX665540 | 296 | 59 | 354 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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