| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000773314 |
| Family | GH28 |
| Protein Properties | Length: 94 Molecular Weight: 10257.4 Isoelectric Point: 4.7166 |
| Chromosome | Chromosome/Scaffold: 013800171 Start: 9396 End: 9858 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 4 | 89 | 3.2e-21 |
| GGYGYAKNISFKQIKLVAAKNPIIIDQHYCNGGHDCKNYTSAVSETDVSYSDFQRTSETEEAIKFDCSEPPGCINIVMDQINNTSA | |||
| Full Sequence |
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| Protein Sequence Length: 94 Download |
| MANGGYGYAK NISFKQIKLV AAKNPIIIDQ HYCNGGHDCK NYTSAVSETD VSYSDFQRTS 60 ETEEAIKFDC SEPPGCINIV MDQINNTSAV AGKE |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-13 | 7 | 87 | 81 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-14 | 4 | 88 | 85 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-16 | 4 | 85 | 82 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-19 | 4 | 84 | 81 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-19 | 4 | 93 | 90 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002266543.1 | 9e-19 | 4 | 85 | 263 | 343 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 1e-18 | 4 | 89 | 261 | 345 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 2e-27 | 4 | 93 | 283 | 371 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 2e-23 | 4 | 84 | 280 | 359 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515527.1 | 9e-23 | 4 | 94 | 242 | 330 | polygalacturonase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DR923379 | 91 | 4 | 94 | 2e-20 |
| DT731103 | 91 | 4 | 94 | 2e-20 |
| DR551720 | 82 | 4 | 85 | 2e-20 |
| DR556291 | 82 | 4 | 85 | 5e-20 |
| DR546551 | 82 | 4 | 85 | 5e-20 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma09g36750.2.98.202 | Glyma09g36750.2.98.202 | |||
| Malus domestica | MDP0000207322 | ||||
| Prunus persica | ppa023418m | ppa020246m | ppa021254m.200.301 | ppa021254m.200.301 | |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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